Basic Information

Gene Symbol
nfxl1
Assembly
GCA_963930755.1
Location
OZ005735.1:194379841-194386039[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 2 5.7e+04 -8.1 6.4 15 19 159 163 158 163 0.82
2 21 0.13 3.7e+03 -0.3 0.4 4 10 194 200 193 200 0.95
3 21 1.8e-08 0.00052 21.6 16.0 1 18 208 224 208 225 0.98
4 21 1.5 4.3e+04 -3.7 2.6 6 10 251 255 250 255 0.89
5 21 9.9e-06 0.28 12.8 13.7 1 18 261 279 261 280 0.96
6 21 2 5.7e+04 -4.5 1.0 6 10 305 309 305 309 0.93
7 21 2.3e-08 0.00066 21.2 12.1 1 19 315 333 315 333 0.99
8 21 0.9 2.6e+04 -3.0 0.5 1 7 358 363 357 365 0.49
9 21 4e-06 0.11 14.1 10.3 3 18 370 385 368 386 0.89
10 21 0.4 1.1e+04 -1.9 0.3 1 5 395 399 395 404 0.85
11 21 2 5.7e+04 -5.0 2.3 5 10 409 414 409 414 0.91
12 21 0.024 6.8e+02 2.0 15.9 1 18 420 437 420 438 0.91
13 21 1.6e-10 4.5e-06 28.2 14.5 1 19 447 465 447 465 0.98
14 21 0.13 3.6e+03 -0.3 8.8 9 19 510 520 501 520 0.89
15 21 0.0021 60 5.4 6.1 1 11 532 541 532 542 0.95
16 21 1.3 3.7e+04 -3.5 1.0 6 10 601 605 600 605 0.83
17 21 4.3e-06 0.12 14.0 7.0 1 12 611 622 611 622 0.97
18 21 2 5.7e+04 -4.3 1.4 15 18 635 638 635 639 0.86
19 21 0.0027 77 5.1 13.6 3 19 651 667 650 667 0.94
20 21 2 5.7e+04 -5.5 2.1 9 13 673 677 672 677 0.72
21 21 6.1e-07 0.017 16.7 11.8 1 18 718 737 718 738 0.91

Sequence Information

Coding Sequence
ATGCCACCAGCCAAAAATAAGAATCAGCAGCAAAATGCCGTTACAAATACTACCCAAAAATTCAATGAGGTCCATGCAAAGAACATCGATGTCGCTAAAAAGTTGGTGGAGAACTATGAATCTTCTGAATCTGAAGAGGAGTTGGATGAAAAAACCATTTTAGATTCCCTATACAAACACTATGATAAACAAAAGGTGGATGAACGTTTGTTGGCCAAAACAAGcggatttttagaaaatgttctacATTCCGGTGCGGCTACTTGTCTCATCTGCATAGCGAGTATAAAACGTGCAGATTCTATATGGTCATGTAAGCATTGCTATTGTTTCTTCCATTTGAACTGCATACGCCGATGGGCGAATGATAGTATGGCACAGATTAAGGCCCAGACACAAGGGGATCAACAGGGTTATTACAATCATTTGGGAGAATATGTGCCACCGAAAAAATTAAAGGCACTACACTGGTGTTGTCCCCAATGCCGCAAGGAATTTACCCCAGAAGAGAAACCCTCGACATATGAGTGTTTTTGTGGAAATGAAACAAATCCTCCATCACAGCCATGGTTAGTTCCACATTCATGTGGTGAGATTTGTAGGAAAGCTCTTCAACCAAATTGCGGCCACAAGTGTACGTTACTGTGTCATCCGGGCCCTTGTCCACCATGTGCTCAATATGCCAATACTACTTGCAAGTGCGGCAAGTCACCAGCAAAATCTGTTCGCTGTATAGACAAACAATGGGAGTGTCAACAAAAATGTGATCGCCTTCTCAAGTGTGGAGAACATGTTTGTGGTCGATATTGTCATAAAGCCGGTCAATGCCCACCTTGCAACAAAACCAGTGAACAGCATTGTGACTGTGGTAGAGAGACCATGAAGAGGCAATGCTATGATTTAGAGTGGCACTGTAAAAATGTATGTAACAGAAGTTATTCATGTGGTTTACACGTTTGTAAAAAGGTTTGTCATTCCGGCGATTGTGGTGATTGCCCATTGAGTTTGCCTCGCTCATGTCCTTGTGGAAAGACTaaaaaagtcggaCCCTGCACAGAATCAATTGACACCTGTGGTGACACTTGCCAAAAGCTGTTACCCTGTCAGCTGCATACATGCACCCAGAGGTGTCACAAAGGAAATTGCAATTTGTGTTTGGTTATTATTAAAAAGAAATGTCGCTGTGGCATGCATGAAAAGGACCTACCATGTTCTAAGGAATTCACTTGTGAAACCAAgtgcaaacaaacaaaagattGTGAAAAACATCCATGCAATCGTAAGTGTTGTGATAAAAATTGTCCTCCTTGCGATAAGATATGTGGCAAACCCTTGTCGTGTGGCAAGCACAAATGTCAGTCTATTTGCCATAAAGGACCCTGTTATCCATGTCAGCAACAGTCGCAAATCCACTGCAGATGTGGTAAAACTAAGAAAATCGTACCATGCGGTAGGGAACGTACCGCACGGGTAGTATGTCTGGAATCTTGCAGAATTCCTTCGAAATGTCATCATTATAATAAACATCGTTGTCATAAAAATGAGTGTCCTTCATGCTCACAGCCTTGCGGTTTGTTAAATGATATCTCGAAATGTGGTCACATTTGCCAGGCCAAATGTCATGCCTCCGTGAAGACGGCCAAGAAATCAAATAAGAATACCGCCAGTATATGGGAACCAACGAAACAGTTTGAATTCAAATCGATGCCGCATCCACGATGTGAACAAAAAGTCTCGGTAACTTGTATTGGTGGACACGAGGTTGCCGAATGGCCTTGTTGGAATTCAAAACCCAGCTCGTGTCAACGTTCATGCAATCGCCAATTGAAATGTGGCAATCACAAGTGTCGACGTGTATGTCACAGTGTTCCGGACTTAAAGGATATGAATCAACAAGTGGGTTGTGCTCCCTGTGATCGAGGCTGTAACATAGCTCGTCCCAAAGGTTGTATCCATCAGTGCCCCCGTGCATGTCATTTGCCCCCGTGTCAGACTTGCAGCGTAGCTATTAAAACCAAATGTCATTGTGGTTTAATGCCCGTCATTTATAAATGCAGTGATTACTATAATAATGAAGGTACAGACAACGATGTGGCCGAAAGACAAGAAAATCTGAAAAGTTGTGGTAATCGTTGTTTAAAGAATTATCCATGCGGTCATCGTTGTTCGGCCAACTGCCACTCGGGCCCCTGTCCTTATCCCGATTCTTGTCGGAAAAAGTTGCGCATATTTTGCGATTGTAAACGTTTGAAATTGGAAATTTCTTGTGACAAGCATCGTTCGGGTCTTACTAAATTAGAATGTGATGAGAATTGCGTGGAGACCCAGAAGAATATGGAATTGGCTCGCAAACGCGAGCAAGAACTTTTACGAAAACAAGAGGAAGAACGCAATCGCTTAGAGGTGGAACAGTTTGAAAAGAAATTTAGTAAACGCAAACCGAAGGAACGTAAAGCTGTTGAGGTACAAGCCAAACAGCCTATACATTGGAAACTAATTGGTGTGTATGCTGGCATTTTAGCGGCCATACTATTGGCGGTTGCTTTAGCATTCTATGAAGAACATTAG
Protein Sequence
MPPAKNKNQQQNAVTNTTQKFNEVHAKNIDVAKKLVENYESSESEEELDEKTILDSLYKHYDKQKVDERLLAKTSGFLENVLHSGAATCLICIASIKRADSIWSCKHCYCFFHLNCIRRWANDSMAQIKAQTQGDQQGYYNHLGEYVPPKKLKALHWCCPQCRKEFTPEEKPSTYECFCGNETNPPSQPWLVPHSCGEICRKALQPNCGHKCTLLCHPGPCPPCAQYANTTCKCGKSPAKSVRCIDKQWECQQKCDRLLKCGEHVCGRYCHKAGQCPPCNKTSEQHCDCGRETMKRQCYDLEWHCKNVCNRSYSCGLHVCKKVCHSGDCGDCPLSLPRSCPCGKTKKVGPCTESIDTCGDTCQKLLPCQLHTCTQRCHKGNCNLCLVIIKKKCRCGMHEKDLPCSKEFTCETKCKQTKDCEKHPCNRKCCDKNCPPCDKICGKPLSCGKHKCQSICHKGPCYPCQQQSQIHCRCGKTKKIVPCGRERTARVVCLESCRIPSKCHHYNKHRCHKNECPSCSQPCGLLNDISKCGHICQAKCHASVKTAKKSNKNTASIWEPTKQFEFKSMPHPRCEQKVSVTCIGGHEVAEWPCWNSKPSSCQRSCNRQLKCGNHKCRRVCHSVPDLKDMNQQVGCAPCDRGCNIARPKGCIHQCPRACHLPPCQTCSVAIKTKCHCGLMPVIYKCSDYYNNEGTDNDVAERQENLKSCGNRCLKNYPCGHRCSANCHSGPCPYPDSCRKKLRIFCDCKRLKLEISCDKHRSGLTKLECDENCVETQKNMELARKREQELLRKQEEERNRLEVEQFEKKFSKRKPKERKAVEVQAKQPIHWKLIGVYAGILAAILLAVALAFYEEH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00817098;
90% Identity
iTF_01232112;
80% Identity
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