Ecya014580.1
Basic Information
- Insect
- Eudasyphora cyanicolor
- Gene Symbol
- -
- Assembly
- GCA_963930755.1
- Location
- OZ005735.1:14461264-14463697[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0027 0.3 13.2 2.9 1 23 245 268 245 268 0.96 2 12 0.0026 0.3 13.2 2.1 1 23 277 300 277 300 0.96 3 12 0.0017 0.19 13.8 4.7 1 23 326 349 326 349 0.90 4 12 0.00023 0.026 16.5 1.5 1 23 366 389 366 389 0.91 5 12 0.00051 0.058 15.5 0.0 1 23 413 436 413 436 0.96 6 12 0.0044 0.5 12.5 3.8 1 23 454 477 454 477 0.94 7 12 0.00011 0.012 17.6 0.9 3 23 491 512 490 512 0.95 8 12 0.0072 0.81 11.9 0.7 2 23 522 544 521 544 0.93 9 12 0.015 1.7 10.9 0.1 2 23 634 656 633 656 0.95 10 12 0.013 1.4 11.1 6.6 1 23 689 712 689 712 0.92 11 12 0.0032 0.37 12.9 2.4 1 23 720 743 720 743 0.94 12 12 9.6 1.1e+03 2.0 0.2 3 11 771 779 770 781 0.88
Sequence Information
- Coding Sequence
- ATGTCTGAATCTAATCCCATTTGCCGGTTATGTGCGAATCCTTGCCAAGATTTTAAAAGTCTTTACGATGAAAAGGGTCTTGGAAATTGGTTGTATAAGTGGGCCTATAAAATGTTTCATCCGGGGaTTGTTAATATGGAAGAGTATAAAAATCTGACGATTATTTGTGAAAAATGTTGTATACATATTTTGGACTGTAGCATTTTCGAATCTACAATAAAGGAGGGTCAATTGAAAATTAAAGAAGAGTTGATTAAACTTCAGAAGCAGCATGTGGAATCAAAAACAGATCAGGATGATCAAATTATTATGGATATTGAAATAAAAGAAGAGTATATACCATTAGAATCCGATGAAATGAATGATAATATTGGCGCCAATGATCATGAAAAACAGAAGGAGATTGACAATGATGAACGTCAAGATTTTGAAGAAAGCACACCAGCGGCTGCAGATCGTTAtgagataaaatttttaaaatcggaaaATTTGGAGGACAATCAGTCATCCCTTAATGACCCGAAGATTTCCAATGAACCTATACTTGATACTTGGATACCCATGATAAAATGTGCTGTGTGTTCGCAAAGTTATTGTGGATATTCCGAACACCGTGACCACTTTCGTCTGGAACACCCTGAAGAACAATTCCATATTATTTGCTGCAATCAGACCATCAGATTAAAATGGCAATTTGAACAACACGCTCAGGTCCACAATAATCCAAaggcattcgaatgcaagcaatGTGACCTATGCTTTTCTACTCCAAGAAGACAGCAAGCGCATATGGACAGATATCATCCCGGATCCGAAGACAATAAAGAATTTAAATGCGAAATCTGTGGCAAGGGCTATCTCAGACTCTCGGGTCTCAATCAACATTACAAGCATAGACACGGGCGAACCGGAAATTTagatcatcagggaacttcaacCTCAAAGTTTCCTGCGGTAGAATCAAGAGCAAATCAGTTCGTCTGCAGTGTCTGTAAGAAATGCTTTGACAACAAAAAGCATTTATATGTCCACTTTgaggaaattcataaaaatgaGGAAATGGCGGATGGAGATACTCGGAGAAAGAAAAAGAAATTCGTTTGTGACAAATGCGACAAAAGTTTCTGTAATGTTAGGGCTCTAATTCGACATAGCGTTCGAGATCATGGCGGTGGAGTAGGTGACGATTCCAAAGCTGGTCCAAAAGTGGTTGAAGTTCCTGCTGAAAAGAGTAAATTCGTCTGTGGCATATGTCAGAAAGGTTTCTACAATGAGGAGGGTCTCAATGTCCATTTGGCTGTGATACACAACATCACCAATGAAGATCTTCAGGCCCAGGAAGATGGGAGTAAACACAAATTCATCTGCGACATTTGTCACAAATGTTTTATGAAGCAACAAGGTTTAAATCTTCACCATGCAGTAGCCCATCGGAAAAATCATCATGTGACAGCTAAACCGAAGAATATTTGTGAAATATGTAACGAAAGCTTTAAGGATCAGAGGACTTTAAATACCCACAGGAccaaaatccataataaacaggAGGTTCCACTCACAATTCACTGTGATGTGTGTAAGAAAGGTTTCTATGATCAGATGGGTCTAAGAATCCACAAAACTGTAATGCATACAACAAACGAAAAGAAATCCCAAGAAGAGGATAGTTTACCCGAGCTCACCTCATCATCCCCTGCAGACGATAGCCAGTCAGCAACAGAAGACCCCGAAGTAATGGATGTAATTTTGTCCCACACCGAATGCAGTTCGGATGAGGAAACTCAATTACCGAAAGGCCCCGACTGTCCTAAGGATAAACTTGGAAGAAAATTGAGTATAAGCTACCAAGAAAAAACTGAAAGTATCGATAAACTTGTAGCCAAATTTATGCCAAATATTAAATGTGATCTGTGTCCCGAATCGTTAGCAAAACTTTCGCTTCTACGCCAACACTTTCGCGAGGAACATCCCAATGACTCATTCTATTTCAGCTGTTGTTACATGAAATTAAGTGCGCTTCATCTTATTGTCAATCATGTTCGCATCCATTTGGACCCCGAAACCTTCAAATGTGTCCACTGTAATCGCAACTATTCGACTAAAAAATGCTTAACAAGTCACATATACGATCAACACCCGGACACAATTACTCAGAAGTTCATATGCTCAAGATGTAAAATTAGTTTTGTGACTAGGTCCAAGCTAAAACTGCATTTTAAAGAGCGACATCAGAACTCCATTTGGTGTAAGGATATTAAACATTTCAGTACTCGTGGAGGATTTGCAAAGGACGGAATTGTTATGGCACCATGTCCACGTTGTCCCAGGAGATTTATTTACATTGGCCGACAAtcaaaatga
- Protein Sequence
- MSESNPICRLCANPCQDFKSLYDEKGLGNWLYKWAYKMFHPGIVNMEEYKNLTIICEKCCIHILDCSIFESTIKEGQLKIKEELIKLQKQHVESKTDQDDQIIMDIEIKEEYIPLESDEMNDNIGANDHEKQKEIDNDERQDFEESTPAAADRYEIKFLKSENLEDNQSSLNDPKISNEPILDTWIPMIKCAVCSQSYCGYSEHRDHFRLEHPEEQFHIICCNQTIRLKWQFEQHAQVHNNPKAFECKQCDLCFSTPRRQQAHMDRYHPGSEDNKEFKCEICGKGYLRLSGLNQHYKHRHGRTGNLDHQGTSTSKFPAVESRANQFVCSVCKKCFDNKKHLYVHFEEIHKNEEMADGDTRRKKKKFVCDKCDKSFCNVRALIRHSVRDHGGGVGDDSKAGPKVVEVPAEKSKFVCGICQKGFYNEEGLNVHLAVIHNITNEDLQAQEDGSKHKFICDICHKCFMKQQGLNLHHAVAHRKNHHVTAKPKNICEICNESFKDQRTLNTHRTKIHNKQEVPLTIHCDVCKKGFYDQMGLRIHKTVMHTTNEKKSQEEDSLPELTSSSPADDSQSATEDPEVMDVILSHTECSSDEETQLPKGPDCPKDKLGRKLSISYQEKTESIDKLVAKFMPNIKCDLCPESLAKLSLLRQHFREEHPNDSFYFSCCYMKLSALHLIVNHVRIHLDPETFKCVHCNRNYSTKKCLTSHIYDQHPDTITQKFICSRCKISFVTRSKLKLHFKERHQNSIWCKDIKHFSTRGGFAKDGIVMAPCPRCPRRFIYIGRQSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -