Ecya033165.1
Basic Information
- Insect
- Eudasyphora cyanicolor
- Gene Symbol
- -
- Assembly
- GCA_963930755.1
- Location
- OZ005736.1:277519908-277522385[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 8.7e-05 0.0099 17.9 4.2 3 23 255 275 254 275 0.97 2 12 0.00045 0.052 15.6 0.4 1 23 281 304 281 304 0.95 3 12 0.00031 0.035 16.1 0.1 1 23 317 339 317 339 0.97 4 12 0.0032 0.36 12.9 1.9 1 21 344 364 344 367 0.96 5 12 2.9e-05 0.0033 19.4 1.7 1 23 373 395 373 395 0.99 6 12 2.1e-06 0.00023 23.0 1.7 1 23 401 423 401 423 0.98 7 12 0.00015 0.017 17.2 3.6 1 23 429 451 429 451 0.96 8 12 3.6e-06 0.00041 22.2 1.9 1 23 456 478 456 478 0.99 9 12 0.00014 0.016 17.3 0.8 1 23 484 506 484 506 0.97 10 12 7.6e-05 0.0086 18.1 3.9 1 23 512 534 512 534 0.98 11 12 3.2e-05 0.0036 19.2 0.5 1 23 540 562 540 562 0.97 12 12 0.0004 0.046 15.8 3.7 1 23 568 590 568 590 0.97
Sequence Information
- Coding Sequence
- ATGTCCACATTTCTGGGACGCATCTGCCGTACCTGCCTCCTAGAATCTTCCACAATGCACAAATTGCTTGATAGGCAAATTGAAGAAATGCTGAATCAaacatttgcaacaaattttgatAGGGGTCTTGATCCTAGCGACCATCTTGAATTCGCTAATTTGCCGTTGGAAATTTGCAAAGATTGTCTTGAAATTGTggcaaatttttataattttcaaaatatggtTTGGGCCAACAATGAGAAGTTGCGAAGTCTGATTAAACATCAAGAAGTTGAAGCTGTTTTTGTAGCGGAGGCATTGGAAACAAACGATGACAAAGACTTTTTGAAAGATGATTGTTTGGGAGATTTCGAAGAGTCGGAATCATTGAAATCGGATCCTGATGAAATTGCGTAtgaagtgcaaaatgttttagaTAAACTGGAGAAAGAAGTAACCAAAGAAGATGATTTTTTGTCCCTGGAAACACTAACAACTATGCACGATGAAAATGGGGACGATATTAAAATAGAAATAGAAGCAGTggaaagaaaaacaaatgactatgaGTTGCTAGAGGAAGACGTCCACGACTTTGTGGAGGAAGACGATGtaaataatgatgatgatgatgaggaatATTGGCCAACTAATGATGGTTATGATAGCGATgacagtaaatgTAATTTGAATAACGATCAGGAAGATGTTAGTAATCCAAAGACCAAGACCACCAGGAAGTACAATAAACGCAACCCCTCGAAATCCTCAAACAAAATCTGCACTATATGCcacaaaacttttaaaaaacgtATGTTCTTAACGCGTCACATGTCGGTTCACAGCGAAGATAATACATTTGTTTGTGATGTATGCGAATATCGGTTTGCCACGGAAAGACTGTTAAAGATACACATATCTTATAAACATAATAAGGGAGAGACCATTAGCTTGGCCGGTGGTCCCTATCAGTGTCCCGATTGTCCCATGGTGTTCCAACAGACTCGAGCCTTGGCTTCCCACAGAGTAATGCATGCGGAAAgaaattttaagtgcaaaatttgtGGAGTAAATCTGAAAACGTTATCGGCTGTTACACGTCACATGAACTGTAAACATCCCGGGATATTGCCATATCAGTGTCAAATATGTAATACTTCATTTCCCGTGGAAACTCATTTTACGGAACACATGAATATGCATAAGGGACAAAAGAAACATAAATGTGATAACTGCGATAAAAGCTTTCCCAATAGCACGGCTTTAAAGGATCACGTGCGTTCACATACCGGCGAGTCTCCCTATTTATGTTCACATTGCGGCAAATCCTTTAAAACGTCCAATATACTGAGACAGCATTTACAAAGACATGGCGAAAAGAATTTCCAATGCCCTGAATGTCCTATGCGTTTCTATGCTAAGGTCAATCTGCAAAAACATATGTGCACCCACTcaaaggagaaaaaatatgtttgtgatgTGTGTGGTTCATCATTCACGCGAGGAGATTCACTCAAATCTCATCGATTTAAACATTCCGGCGAACGGCCGTTCAAGTGTGAAGAATGTAATATGAGTTTTGTTTTCAAACGCCATTTACTAAGGCATAAAATTACGCATACAGGAGAGAAACCGCATATGTGCAACTACTGTGATCGTGCCTATGCCGCTAGCGGCGATCTGGTGAAACACTTGCGAACTCACGTAGGAGAAAATACATATTTCTGTGATGAATGTCCACAAACATTTAAATATCGACATGATTTACGGGATCATAAGAATCAACATTACAAAGAGAAAACTTCAACTACAACTGAAGTGGTCGTGGATAAGGATGAAGCTCAGACCGGTGAAAATTAG
- Protein Sequence
- MSTFLGRICRTCLLESSTMHKLLDRQIEEMLNQTFATNFDRGLDPSDHLEFANLPLEICKDCLEIVANFYNFQNMVWANNEKLRSLIKHQEVEAVFVAEALETNDDKDFLKDDCLGDFEESESLKSDPDEIAYEVQNVLDKLEKEVTKEDDFLSLETLTTMHDENGDDIKIEIEAVERKTNDYELLEEDVHDFVEEDDVNNDDDDEEYWPTNDGYDSDDSKCNLNNDQEDVSNPKTKTTRKYNKRNPSKSSNKICTICHKTFKKRMFLTRHMSVHSEDNTFVCDVCEYRFATERLLKIHISYKHNKGETISLAGGPYQCPDCPMVFQQTRALASHRVMHAERNFKCKICGVNLKTLSAVTRHMNCKHPGILPYQCQICNTSFPVETHFTEHMNMHKGQKKHKCDNCDKSFPNSTALKDHVRSHTGESPYLCSHCGKSFKTSNILRQHLQRHGEKNFQCPECPMRFYAKVNLQKHMCTHSKEKKYVCDVCGSSFTRGDSLKSHRFKHSGERPFKCEECNMSFVFKRHLLRHKITHTGEKPHMCNYCDRAYAASGDLVKHLRTHVGENTYFCDECPQTFKYRHDLRDHKNQHYKEKTSTTTEVVVDKDEAQTGEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -