Eocu026088.1
Basic Information
- Insect
- Eucriotettix oculatus
- Gene Symbol
- -
- Assembly
- GCA_034510155.1
- Location
- CM067379.1:2475026-2490018[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.2 1.3e+02 4.6 0.3 3 17 153 167 152 168 0.85 2 12 0.39 40 6.2 0.0 1 16 194 209 194 211 0.88 3 12 0.0088 0.9 11.4 0.9 2 23 574 596 573 597 0.96 4 12 0.0029 0.3 12.9 1.6 1 23 602 624 602 624 0.98 5 12 6.2e-05 0.0064 18.2 2.9 1 23 630 652 630 652 0.96 6 12 0.0041 0.42 12.4 4.3 1 20 658 677 658 680 0.92 7 12 4.9e-05 0.0051 18.5 3.6 1 23 689 711 689 711 0.98 8 12 0.00011 0.011 17.4 0.1 1 23 717 739 717 739 0.98 9 12 0.00053 0.055 15.2 1.4 1 23 745 767 745 767 0.93 10 12 5.7e-05 0.0059 18.3 0.8 1 23 773 795 773 795 0.98 11 12 0.00081 0.083 14.7 1.8 1 23 801 823 801 823 0.98 12 12 7.5e-06 0.00077 21.0 1.5 1 23 829 852 829 852 0.98
Sequence Information
- Coding Sequence
- ATGCGACGGCTTACTACTGGAAGAAACCACCAATCGTCTCCGAAGGATCCCTACCTAAGGGCACAGGGAACCTCTCAACAGAAACTGATACGAAAATGGGCTTCGGGAATGCAGCGTCGGCGGAGGGACATGGACTACTGCAGAGTTTGCGCCAAGAGGAAGGAGAAGTGCGTGCAAATCCTGGGGGACGAAGGGAAGAGGAGATTCCTCGCGGACAAGATCAAAACCTGCCTCGACATCGTCGTGAGTACTTCACACTTCCCTTCTCCTACTATTCCCAATCACGTAATGCAGCGTCGGCGGAGGGACATGGACTACTGCAGAGTTTGCGCCAAGAGGAAGGAGAAGTGCGTGCAAATCCTGGGGGACGAAGGGAAGAGGAGATTCCTCGCGGACAAGATCAAAACCTGCCTCGACATCGTCGTGCAGCGAGAGGACAAGCTGCCGCTCACCCTGTGCCCGGACTGCGGCAAAAAGCTGTCCGAATTCTCCCAGTTCCGAGATATGGGTTTCCACGCTCAGCTCTGGATGGAGATGTGTCTCGTCAGGCCCCAGgaggacgaggacgagggcGAGGGCTACACGTGCGACTCCTGCGGGGCGACCTTTGCGGACAAGGCTGTGCTGCGGCttttgttttgttttgatgtGTTGTTACTGCTTGCCGCTATTGATCGCGGCGCCATTGACCGGTGCTGCCCTCCCTTGGCGGCCGCCAGGACTCGCTATCGATCAGCGGCGCGGTGTCGCGCTCTGTTGGCGGCGTTGCTAACTCGCTGGGCGAGCGATGTCGGGGCTCCGGCCGAAAGTTGCTTCGTCGCGGCGTTGTTTATAAACAAGCGAGGAGGAAGGATGCTGTGTCGCCTGTGCGCCAACGAGAGGGAGAGCTTCGTGCGCATCTACGAGGAGGAGGGCCAGAAGCTCAACCTCGCCACCAAGATCATCCAGTGCCTCCAGATATGGCTGTATCCGGAGGACCCGCTGCCCAAGACGGTGTGCATCGACTGCTGCGCGAAGCTGAACCAGTACTTCGACTTCTTCGAGACGACTTCTAGGGCGCAGCTGTCCCTGCAGATCCTCTTCAACCCCAAGATGGACAAGCACGAGCCCAAGGGCGAGCCCGCGGACGTCGTCGCCGCCGTCGCCAAACTGGAGCCCCCCGACGGAGGCGGAGGGGCCAGGCGAGGAGAGGAGGACGacgaggaagaggaggaggaagaggaggacgAAGACGGGGGCGGCGTGGGAGCGGGGGAAGAGGACGACAGAGACGCTGAGCCTCCAGAGTTTGTGGAATGCGTTCTTTCAGACAAAGAGGGGAACAACGTGGCACAGCAAAGGAACGGAACCGCGGTCACGTCGAGGAGGAAACGCAGAGTTCCCGTCAAGAGGACGCCCTCGGGAAAGCAAGGCGCGAGGTCGAGGGAGAGGGCTTCCACCAGGAGCAGGTCTCGCGTCACCCGAAAAGAGAGGTCGGTCTCCCAGGAGAGGATTCCGCTCAAGGAGAGGCTGTTACAAGTCAAAGCCAGGTTGGAGCGGAAGGAAAAGGAATCGACTCCCCCCGTAGAGAGCGAGAAGGAAGAGGAGGACGAGGAAGAGGAGAAATTTGAGACGGAGGAGGCGGAAGAGGAGGACGGCGAGAAGAAGCGCCGCAGGAAGAAGGACTCGGCCGAACCGAAGCCGCCGAGACCCAAGGCCGTGCTGGAGGGTTACCCTTGGCAGTGCACCGATTGTCCCGTCGTGTTGGCCTCCCTGCAGGAATTGCGCAATCATCACCAGACCCTGCACCACCAACCGCCCAACTTCAAATGCGTGCAGTGCGCGAAGGTCTACACCCGTTACCGCAGCTTCGCGCGCCACGTGAAGCTGCATCGTAACCCTAAGAAGTTCAGGTGCGAGGAATGCGGCAAGTGCTTCTCACAGAAGACGGTCCTGCAGTCCCACAGTACGGTGCACACCGACGCCCGGCCACACGTCTGTCCGCAGTGTGGGAAGGCGTTCAAACAGTTCAGCTCTCTCTACCTGCACAGCAAGTGCCACCTGCCGGACCAGGTCAAACCCAAGTTCCCTTGCGATATCTGCCATAAGGACTTCGCAACGAAGCACACGCTCGAGACGCACCGAAAGATCCACACGGGCGAGCGAAACTTCATCTGCGACGTCTGCGGGAAGAGTTTCATCGCCAAGGGCAGTCTCGACTACCACATCCTCACCCACTCCGGCGAAAAGCCGCACCACTGCCCCGTCTGCGGCAAGGGGTTCAAGACTGCCCGGTTGTTGGGGAAACACGCCACCTTACACACCGGCATCAAGCCCCATCAGTGCGACGTCTGCGGGAAGCAGTTTCGGGAACGCGGCGCTCTGCGGGAACACAACCGAATCCACACCGGCGCCATGCCCTACACCTGCGAGTTCTGCGGCAAAAACTTCCGTTTCAAGGGAATCCTCACGGTGCATCGGAGGCAGCACACGGGGGAGCGACCGTACAGCTGCGCCGAGTGCCGCAGGGAATTCACCAACTGGGCCAACTACAACAAGCACATGAAAAGGCGCCATCGGAACAACGAGGACCCCAACAGCGTCAACCCCAACCGGAGCACGGCACGGACTTACCACCCTCCCTCGGGTGTCGTGGTGGGCAACGTCGTGGGAGGCGTCGGGACGCCCGGCGGAGTCCTACCCCCCAACGGCATCAAAATGAGCCTCCAGGCGAACGCCaactccgccgccgccgccgcggtGGTCTCCGCTGCGGTGTCCGTGGCCTCGCTGGGCGGAGCCTACAACCTCGGCGGCGCCCACGTGGTGGGCGACGACGGCACCGGCATGGGCGGCGGGACGACCGCCATGGGCGTCCCGCAGCCGGGGTCTCTGTACCAGAACCACCAGAACGTCGGCTCCGCCGTAGCCAAGATGGCGGTGTACGGAACTCACGGGAATTCCGACAAGGTGGGAGACGTCTTCCACGCCGGGGTGAACCACGTGGGGACGAAGATGTCCACCTCGGTCGGAGACGTGTACCATCAGCACCGGCCGGACGGCGGGCAGGACGCCGTGGACAGGACCCCGTCGCAACCTGATCTCGTGGGATCCTACCACGTCCCGTCGTACGTCCCCGCCGGCCTGCCCATGGCCAGCATGGGGTATTACATCCCCCCCATACACCACGCGGACCCGGGCATGGACCTTCTGCACAACCGGATGGCGAACAACCAGTAG
- Protein Sequence
- MRRLTTGRNHQSSPKDPYLRAQGTSQQKLIRKWASGMQRRRRDMDYCRVCAKRKEKCVQILGDEGKRRFLADKIKTCLDIVVSTSHFPSPTIPNHVMQRRRRDMDYCRVCAKRKEKCVQILGDEGKRRFLADKIKTCLDIVVQREDKLPLTLCPDCGKKLSEFSQFRDMGFHAQLWMEMCLVRPQEDEDEGEGYTCDSCGATFADKAVLRLLFCFDVLLLLAAIDRGAIDRCCPPLAAARTRYRSAARCRALLAALLTRWASDVGAPAESCFVAALFINKRGGRMLCRLCANERESFVRIYEEEGQKLNLATKIIQCLQIWLYPEDPLPKTVCIDCCAKLNQYFDFFETTSRAQLSLQILFNPKMDKHEPKGEPADVVAAVAKLEPPDGGGGARRGEEDDEEEEEEEEDEDGGGVGAGEEDDRDAEPPEFVECVLSDKEGNNVAQQRNGTAVTSRRKRRVPVKRTPSGKQGARSRERASTRSRSRVTRKERSVSQERIPLKERLLQVKARLERKEKESTPPVESEKEEEDEEEEKFETEEAEEEDGEKKRRRKKDSAEPKPPRPKAVLEGYPWQCTDCPVVLASLQELRNHHQTLHHQPPNFKCVQCAKVYTRYRSFARHVKLHRNPKKFRCEECGKCFSQKTVLQSHSTVHTDARPHVCPQCGKAFKQFSSLYLHSKCHLPDQVKPKFPCDICHKDFATKHTLETHRKIHTGERNFICDVCGKSFIAKGSLDYHILTHSGEKPHHCPVCGKGFKTARLLGKHATLHTGIKPHQCDVCGKQFRERGALREHNRIHTGAMPYTCEFCGKNFRFKGILTVHRRQHTGERPYSCAECRREFTNWANYNKHMKRRHRNNEDPNSVNPNRSTARTYHPPSGVVVGNVVGGVGTPGGVLPPNGIKMSLQANANSAAAAAVVSAAVSVASLGGAYNLGGAHVVGDDGTGMGGGTTAMGVPQPGSLYQNHQNVGSAVAKMAVYGTHGNSDKVGDVFHAGVNHVGTKMSTSVGDVYHQHRPDGGQDAVDRTPSQPDLVGSYHVPSYVPAGLPMASMGYYIPPIHHADPGMDLLHNRMANNQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -