Eocu031209.1
Basic Information
- Insect
- Eucriotettix oculatus
- Gene Symbol
- Snai1
- Assembly
- GCA_034510155.1
- Location
- CM067379.1:114991742-114994998[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00033 0.034 15.9 0.1 1 23 284 306 284 306 0.95 2 12 4.3e-05 0.0044 18.7 1.6 1 23 314 336 314 336 0.99 3 12 9e-06 0.00093 20.8 0.4 2 23 344 365 343 365 0.97 4 12 5.1e-06 0.00053 21.6 0.7 1 23 371 393 371 393 0.98 5 12 0.00024 0.025 16.3 2.2 1 23 400 422 400 422 0.98 6 12 5.5e-05 0.0057 18.3 0.0 1 23 428 450 428 450 0.94 7 12 4.4e-05 0.0045 18.6 0.3 1 23 456 478 456 478 0.98 8 12 1.3e-06 0.00013 23.5 1.2 1 23 484 507 484 507 0.96 9 12 7.4e-06 0.00076 21.1 0.6 1 23 513 536 513 536 0.96 10 12 6.6e-05 0.0068 18.1 3.2 1 23 542 564 542 564 0.99 11 12 0.00015 0.015 17.0 1.6 1 23 570 592 570 592 0.96 12 12 0.056 5.7 8.9 1.0 1 23 598 622 598 622 0.91
Sequence Information
- Coding Sequence
- ATGACTGCAGACACTGATAGAGGTCATAACACCACTTCTAAAAATACGCATTGCCTTATATGTAATAGTAAAGTTGCTGTTTCATCTCGCAATAGCTGCAATATCTTCCATAAGTACACTGTAACATCTACTGACAAACCAGTGTCCTACACTATTAGCACAGTTCTGGGACAGGAGCTAAATGAAGAAACTGCACATAGCCATGTAATCTGCAAAAAGTGTTTCAAATTGCTTAATGAAATAGATGAAATTGAAGCAAGGCTATGTGAAGTTAAGTTGGAAATAACAACTAATTACAATCGGTCACTTAGAATTCAGAGTGAAGTAGAAAGAGATGTGATAGAGCTTGATGATGATGAAGACgatgaaacaagaaaattgcCTTTAGGCACAGATGATGCAAATATTGTTAAGCAGAAAATTGTTGCCAAATCTCGAAAGAAAGGcccacccaaaaaaattaaacaagttcATTTGGGTCAGGTTGGAGAAGAAGATTATGAACAAAAGGAAAATGCTGCGTGTGAACCTGAAGGTTCTGATCAAGATAGTAACTACAATACTGAAGTATTAGCTACTCATGAAATATCTGATGGAAATGAAGAAGGCCAAGTGATTCAAATAAAGCTTGAACCTGATGACGATATCTCTACAAAAGACATCTCTAGAAGAAGAGTCAAACGAAAGTCGAAGTCAATAAGTGAATCAAATGATGTGGAGGTGCCTGATAAGGTTGTCTGTAGGGAAGGTTCCGATTTCATTTGTTTGATTTGTGATAGTGATGAAAAAATTGTAGGTGATATGAAGGGAATAGCTGGACATTTGAAGAATGTGCacaatattagaatatacatCTGTGATATCTGTGGGCAAGATTTTCGTAAGAGAAATGAACTATCTGTTCATTTAGATGAGCACGCTGCTGCTGAAGATGGTGATTTCCAGTGTGAAGtatgtaatagaatatttagTAACTTGCGTCTTTTCAGAGTTCATAAACGAATGCATTATCCTCAGTCCAAGTTGTGGACATGTGAAACGTGTGGCAAGCGTTATAGTTCACGTAATTTACTGGAAGAACACATTAATACTCATACTGGAGTGCGTCCTTATGTATGTGAAATTTGTGGTAAAGACTTTGCTTCAAAGTATACATATAAAGCTCACTCTAAAACACATGAAATTCGCCCTCGCCCATTTTCTTGTTCTGAGTGCCACAAAACATTCCTCAGTGCTCAAAATTTGGCTCAACATGAGAGAACACACAATGGTATGAGAGATTATGTGTGCGAGCAATGTGGTAAAGCCTTCGGCACTGCACGTAATTTGGAAGTCCACAGTGTGGTACATTCAGGATATAAGCCTTTCATATGTCGAACATGTGGAAAGGCATTCGCGCGGAAAGCAGAAATACGTGATCATGAAAGAACacatactggtgaaaaaccttatCAGTGCGAGTTCTGTGGGGCAACTTTCAGTCAACGAAGCAACCTTCAGTCTCATAAAAGAGCAACACATTTACAGGATAAACGTTACAAGTGTTCAGATTGTGGTAAAGGATTTAAAAGACGCAGACTTTTAGATTATCATATTAAAGCTGCTCATACAGGTGAAAGACCATACAAATGCCCTACGTGTTTTGCAACATTTGTCTACCCTGAGCATTTCAAAAAGCATAGACGTATTCACACTGGAGAAAAACCTTTCCACTGTGAAGTATGTGGTAAAGCATTCAATAGTAGAGATAACAGAAATGCCCACAGATTTGTGCATAGTGATAAAAAACCATATGAATGTCTCTGCTGTGGAATGGGATTTATGCGAAAGCCTCTTCTGTATAATCATATGCAAACCCAAGGCCATCTTAATGACACCATTGTGGTGAATCAACCACGACTTACAAATGATGAAGAATTGGTTACTGAAAACACTGATCTGCTTCCAGAAACGACAGAGGTTGAAATGACAATAGTAGATGGGCAGCAGCAAGATCATGAAACAAAAGTATATATAGCTGGTCTCAAAGACCATGTCATAATACAACAAGAAGGGGAAGACCGGTGCTATGCTGAAAAAACTGTAATGGTCGGAGAAGCTGATATGAAAGAACAAGGTATTGTTCAAGAGGCTGTGGAGCATCTTATCATAGATGGGCAGGTTCATTTTGCTGATCCTTCTGAACTAGCTGACATGGGATCTGTAACAGAGGTCACAACTACTCCTAATTTCAGAGCAACTGAAGGTCGTCATGCACTTGTAGTACCAGCAACTCCTAATCATTCCACCTATGATGGTCAGTCAACTGTACAAGATGCTACCAATATAACTACATTGGGTAGCACTGCTTTACAAACGACAAGTGGGCCTGTTCATTTGGTGCAAATAAGAATACCTTCTACAGAGACTTTGGGTTCTAATCGGGCATGGTTCAGTGTTGTTGAGAATcaaggttaa
- Protein Sequence
- MTADTDRGHNTTSKNTHCLICNSKVAVSSRNSCNIFHKYTVTSTDKPVSYTISTVLGQELNEETAHSHVICKKCFKLLNEIDEIEARLCEVKLEITTNYNRSLRIQSEVERDVIELDDDEDDETRKLPLGTDDANIVKQKIVAKSRKKGPPKKIKQVHLGQVGEEDYEQKENAACEPEGSDQDSNYNTEVLATHEISDGNEEGQVIQIKLEPDDDISTKDISRRRVKRKSKSISESNDVEVPDKVVCREGSDFICLICDSDEKIVGDMKGIAGHLKNVHNIRIYICDICGQDFRKRNELSVHLDEHAAAEDGDFQCEVCNRIFSNLRLFRVHKRMHYPQSKLWTCETCGKRYSSRNLLEEHINTHTGVRPYVCEICGKDFASKYTYKAHSKTHEIRPRPFSCSECHKTFLSAQNLAQHERTHNGMRDYVCEQCGKAFGTARNLEVHSVVHSGYKPFICRTCGKAFARKAEIRDHERTHTGEKPYQCEFCGATFSQRSNLQSHKRATHLQDKRYKCSDCGKGFKRRRLLDYHIKAAHTGERPYKCPTCFATFVYPEHFKKHRRIHTGEKPFHCEVCGKAFNSRDNRNAHRFVHSDKKPYECLCCGMGFMRKPLLYNHMQTQGHLNDTIVVNQPRLTNDEELVTENTDLLPETTEVEMTIVDGQQQDHETKVYIAGLKDHVIIQQEGEDRCYAEKTVMVGEADMKEQGIVQEAVEHLIIDGQVHFADPSELADMGSVTEVTTTPNFRATEGRHALVVPATPNHSTYDGQSTVQDATNITTLGSTALQTTSGPVHLVQIRIPSTETLGSNRAWFSVVENQG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01565772;
- 90% Identity
- iTF_01565772;
- 80% Identity
- -