Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.19 2.1e+02 3.3 0.5 17 41 10 31 3 33 0.73

2 9 0.023 25 6.3 0.2 17 41 38 59 32 60 0.86

3 9 0.02 22 6.5 0.8 17 38 66 88 60 89 0.78

4 9 0.0032 3.5 9.0 0.6 17 40 94 114 89 118 0.88

5 9 0.00054 0.59 11.5 5.2 5 38 136 169 132 170 0.87

6 9 0.021 23 6.4 0.3 18 41 176 196 170 198 0.83

7 9 0.015 17 6.8 0.6 17 41 203 224 197 226 0.86

8 9 0.0074 8.2 7.8 0.9 18 40 232 251 225 257 0.88

9 9 5.8 6.5e+03 -1.4 0.3 18 39 260 278 253 285 0.65

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.19	2.1e+02	3.3	0.5	17	41	10	31	3	33	0.73
2	9	0.023	25	6.3	0.2	17	41	38	59	32	60	0.86
3	9	0.02	22	6.5	0.8	17	38	66	88	60	89	0.78
4	9	0.0032	3.5	9.0	0.6	17	40	94	114	89	118	0.88
5	9	0.00054	0.59	11.5	5.2	5	38	136	169	132	170	0.87
6	9	0.021	23	6.4	0.3	18	41	176	196	170	198	0.83
7	9	0.015	17	6.8	0.6	17	41	203	224	197	226	0.86
8	9	0.0074	8.2	7.8	0.9	18	40	232	251	225	257	0.88
9	9	5.8	6.5e+03	-1.4	0.3	18	39	260	278	253	285	0.65

Coding Sequence: atgaggactcacactggtgagaaaccatacaaatgtgttgaatgtgataaagcattctcacaattaacaaaattaacaacccacatgaggactcacactggtgagaaaccatacaaatgtattgAATGTGATAAAGCATTCTCAGAATCGTCAACCCTATTAGGACACATGAGAACacacactggtgagaagccatacaaatgtgttgaatgtgataaagcaTTCTCACAATCCACAAAATTAACAACCCATATGAGGagtcacactggtgagaaaccatacaaatgtgttgagtgtaatAAAGCATTCTCACGATCCTCAAGGTTAAAGACCCATGTGCGGATTCATACTGATAGGAAACTATAcgaatgtgttgagtgtgatggAGCGTTCCCAAACTTAACAagccacatgaggattcacagcGGTGAAAAACCGTACAAGTGTGTTACATGCAATAAAGCATATTCACGCTCTGCACACTTAACAAATCActtgaggactcacactggtgacaAGCCATACacatgtgttgaatgtgatgaAGCATTCTCAAACTCATCAACTCTATCAAaccacatgaggactcacactggagagaagccatacaaatgtgttgaatgtgatacagCATTCTCACGTTCCTCATCCCTATCAAggcacatgaggactcacactggtgagaaaccatacgaGTGTACTGAGtgtcataaaacattttctgattTTTCAAACTTAACAAGCCACATTAGGATTCACACTGGTcagaagccatacaaatgtgttgaatgtgatacagCATTCTCACATTCCCCAGCCCTATCAAGGCACATGATGATTCACACTCgcaagaaaactttaaaaaaaattgattga
Protein Sequence: MRTHTGEKPYKCVECDKAFSQLTKLTTHMRTHTGEKPYKCIECDKAFSESSTLLGHMRTHTGEKPYKCVECDKAFSQSTKLTTHMRSHTGEKPYKCVECNKAFSRSSRLKTHVRIHTDRKLYECVECDGAFPNLTSHMRIHSGEKPYKCVTCNKAYSRSAHLTNHLRTHTGDKPYTCVECDEAFSNSSTLSNHMRTHTGEKPYKCVECDTAFSRSSSLSRHMRTHTGEKPYECTECHKTFSDFSNLTSHIRIHTGQKPYKCVECDTAFSHSPALSRHMMIHTRKKTLKKID

Sequence clustering based on sequence similarity using MMseqs2