Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.057 63 5.0 0.2 14 40 5 28 2 31 0.85

2 11 0.0047 5.2 8.5 1.8 6 41 26 57 25 59 0.81

3 11 0.0024 2.6 9.4 0.5 17 41 64 85 57 87 0.81

4 11 0.18 2e+02 3.4 0.0 18 40 93 112 87 115 0.84

5 11 0.067 75 4.8 1.6 5 40 109 140 105 146 0.79

6 11 0.0024 2.7 9.4 3.7 9 41 141 169 137 171 0.77

7 11 0.0041 4.6 8.6 1.6 17 41 176 197 170 199 0.80

8 11 0.061 67 4.9 1.5 15 37 202 225 194 227 0.74

9 11 1.1 1.3e+03 0.8 0.5 19 38 234 250 228 255 0.77

10 11 0.21 2.3e+02 3.2 2.3 18 38 261 282 257 289 0.77

11 11 0.027 29 6.1 2.6 17 41 288 313 283 314 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.057	63	5.0	0.2	14	40	5	28	2	31	0.85
2	11	0.0047	5.2	8.5	1.8	6	41	26	57	25	59	0.81
3	11	0.0024	2.6	9.4	0.5	17	41	64	85	57	87	0.81
4	11	0.18	2e+02	3.4	0.0	18	40	93	112	87	115	0.84
5	11	0.067	75	4.8	1.6	5	40	109	140	105	146	0.79
6	11	0.0024	2.7	9.4	3.7	9	41	141	169	137	171	0.77
7	11	0.0041	4.6	8.6	1.6	17	41	176	197	170	199	0.80
8	11	0.061	67	4.9	1.5	15	37	202	225	194	227	0.74
9	11	1.1	1.3e+03	0.8	0.5	19	38	234	250	228	255	0.77
10	11	0.21	2.3e+02	3.2	2.3	18	38	261	282	257	289	0.77
11	11	0.027	29	6.1	2.6	17	41	288	313	283	314	0.89

Coding Sequence: ATGAACTCTGCTGAAAAATCGTACAGTTGTGCAGGCTGTGATAAAACATTCGCGGTATCCTCGAGCTTAACAAGgcatatgaggattcacacaggtgaaaagccgtACAAATGTGTTAAGTGCGGCAAAGATTTCTTACAATCCTCAAGCTTAACAAGGCActtgaggactcacactggcgagaagccatacaaatgtgtcgagtgtgacaAAGAATTCTCTCAATCCTCAACTTTAACGAGTCActtgaggactcacactggcgaaaaaccgtacaaatgtgtcgagtgtgataaaGAATTCCCAGAATCCTCGAACTTGGCAGcccacatgagaattcacaccggtgaaaagccatacagaTGTGTGGAGTGCGATAAAGCTTTCTCACAATCCTCACATTTAACATaccacatgagaattcacaccagtaaaaagccatacaaatgctTAAAGTGCGAGAAGGCGTTCTCCCAGTCCTCAACCTTAACAATGCatatgaggactcacactggtgaaaagccgtACAAATGTGCTGTTTGCGGGAAAACATTCTCTAAATCCTCGCACTTAACAGATCACATTAGGACTCACACGGGTGAAAAGCCGTATAAATGTGAAGGATGTGGTGCAGCATTCTCACAATCCTCTAGCTTAACAACACACATGAAGATCCACGCCGGTGACAAACCGTACCactgtgttgagtgtgataaaactttCTCAAAATTGTCAGGGTTAACAAATCATACGAGGACACACACTGGCCAAAGGCCATACAAATGTCTCCAGTGTGGTAAAGCATTCTATCAATCCTCACACTTAACTGgccacatgaggactcacactggggAAAGGTCACACAAATGTGCTGAGTGCGACAAAACATTCATTCAGTCTGCACACTTAACAAgccacatgaggactcacattAGCCATACGGATATGTCAAATGTATTAAAGAATTCCCCAAATCCTCAGACATAG
Protein Sequence: MNSAEKSYSCAGCDKTFAVSSSLTRHMRIHTGEKPYKCVKCGKDFLQSSSLTRHLRTHTGEKPYKCVECDKEFSQSSTLTSHLRTHTGEKPYKCVECDKEFPESSNLAAHMRIHTGEKPYRCVECDKAFSQSSHLTYHMRIHTSKKPYKCLKCEKAFSQSSTLTMHMRTHTGEKPYKCAVCGKTFSKSSHLTDHIRTHTGEKPYKCEGCGAAFSQSSSLTTHMKIHAGDKPYHCVECDKTFSKLSGLTNHTRTHTGQRPYKCLQCGKAFYQSSHLTGHMRTHTGERSHKCAECDKTFIQSAHLTSHMRTHISHTDMSNVLKNSPNPQT

Sequence clustering based on sequence similarity using MMseqs2