Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0032 3.5 9.0 1.4 16 40 7 28 2 31 0.85

2 12 0.36 4e+02 2.4 0.6 17 38 36 58 28 59 0.82

3 12 0.42 4.7e+02 2.2 2.0 11 38 59 82 48 84 0.73

4 12 0.0011 1.2 10.5 2.7 6 41 82 113 77 115 0.79

5 12 0.019 21 6.6 1.5 15 41 118 141 110 144 0.79

6 12 0.47 5.3e+02 2.1 2.0 16 38 147 166 138 171 0.78

7 12 0.025 28 6.1 2.8 13 40 172 196 165 199 0.68

8 12 0.04 44 5.5 1.0 14 40 201 224 193 227 0.80

9 12 0.022 24 6.3 3.7 6 40 222 252 221 255 0.83

10 12 0.0065 7.2 8.0 0.3 17 40 260 280 252 283 0.86

11 12 0.019 21 6.6 1.0 5 40 277 308 273 311 0.75

12 12 0.022 24 6.3 0.5 17 41 316 337 310 338 0.86

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0032	3.5	9.0	1.4	16	40	7	28	2	31	0.85
2	12	0.36	4e+02	2.4	0.6	17	38	36	58	28	59	0.82
3	12	0.42	4.7e+02	2.2	2.0	11	38	59	82	48	84	0.73
4	12	0.0011	1.2	10.5	2.7	6	41	82	113	77	115	0.79
5	12	0.019	21	6.6	1.5	15	41	118	141	110	144	0.79
6	12	0.47	5.3e+02	2.1	2.0	16	38	147	166	138	171	0.78
7	12	0.025	28	6.1	2.8	13	40	172	196	165	199	0.68
8	12	0.04	44	5.5	1.0	14	40	201	224	193	227	0.80
9	12	0.022	24	6.3	3.7	6	40	222	252	221	255	0.83
10	12	0.0065	7.2	8.0	0.3	17	40	260	280	252	283	0.86
11	12	0.019	21	6.6	1.0	5	40	277	308	273	311	0.75
12	12	0.022	24	6.3	0.5	17	41	316	337	310	338	0.86

Coding Sequence: ATGCACACTAGTAAGAAGTTACACAgatgtgtcgagtgtgataaaacattctcaaaatCTTCAAACTTGTCAAACcatatgagaattcacactggggAGAAACCATaccaatgtgttgagtgtgataaaacattctcggTATCCTCTATCTGGACTAgccacatgaggactcacacaggtgagaaaccatacaaatgtgttgagtgtgacaAAACATTCTCACAATCGTCAAGTTTGTCAAAACACAcaagaattcacactggtgagaaaccatacaaatgtggtCATTGTGATAAAACTTTCTCCCTATCATCAGTCTTAACAAACCATATAAGGACTCACacaggtgagaaaccatacaaatgcattgagtgtgataaaacattctcacgGTCTTCAGACTTAACAATCCATATAAGGACTCACAGTGGTGAAAAGccttacaaatgtgttgaatgtgataaaacattctcaaaatCATCAAACTTGACATTCCACacgaggattcacactggtgaaaaaccatacaaatgtgttcattgtgataaaacattctcaatgTACTCGAGTTTGACTACTCAcgtgaggactcacactggagagaaaccatacaaatgcgtcgagtgtgataaaacattctctcaATCTGCAAACTTGGCAAaccacatgagaattcacaccgGCGAGAAACCATatcaatgtgttgagtgtgataaaacattctcgcTGTCCTCATGCTTGACTaaccacatgaggattcacactggtgagaaaccttaCACGTGCagtgagtgtgataaaacattctctcaGTCCTCAAACTTGGCAAATCACATTAGAATTCATACTGGAGAGAAACCGTAtgaatgtgttgagtgtgataaaacattctcagtATCCTCAAGCTTGACAAACCACATGAGagttcacactggtgagaaaccgttcaaatgtgtcgagtgtgataaaAGATTCTCACAATCTTCAACATTAATGAACCACGtaaggactcacactggtgaaactCATAGCAATGTCTTAAAAGGATTTCATCACATttga
Protein Sequence: MHTSKKLHRCVECDKTFSKSSNLSNHMRIHTGEKPYQCVECDKTFSVSSIWTSHMRTHTGEKPYKCVECDKTFSQSSSLSKHTRIHTGEKPYKCGHCDKTFSLSSVLTNHIRTHTGEKPYKCIECDKTFSRSSDLTIHIRTHSGEKPYKCVECDKTFSKSSNLTFHTRIHTGEKPYKCVHCDKTFSMYSSLTTHVRTHTGEKPYKCVECDKTFSQSANLANHMRIHTGEKPYQCVECDKTFSLSSCLTNHMRIHTGEKPYTCSECDKTFSQSSNLANHIRIHTGEKPYECVECDKTFSVSSSLTNHMRVHTGEKPFKCVECDKRFSQSSTLMNHVRTHTGETHSNVLKGFHHI

Sequence clustering based on sequence similarity using MMseqs2