Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.0043 4.8 8.6 0.1 17 41 10 31 3 33 0.81

2 8 0.2 2.2e+02 3.3 0.1 17 40 38 58 32 61 0.80

3 8 0.00078 0.86 11.0 2.3 5 41 55 87 51 89 0.86

4 8 0.01 11 7.4 1.4 17 41 94 115 88 117 0.74

5 8 0.014 15 7.0 5.6 18 41 151 171 117 173 0.92

6 8 0.028 31 6.0 0.9 15 41 176 199 171 201 0.84

7 8 0.088 98 4.4 2.3 17 38 206 224 199 229 0.80

8 8 0.00025 0.27 12.6 1.7 15 41 232 255 223 256 0.82

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.0043	4.8	8.6	0.1	17	41	10	31	3	33	0.81
2	8	0.2	2.2e+02	3.3	0.1	17	40	38	58	32	61	0.80
3	8	0.00078	0.86	11.0	2.3	5	41	55	87	51	89	0.86
4	8	0.01	11	7.4	1.4	17	41	94	115	88	117	0.74
5	8	0.014	15	7.0	5.6	18	41	151	171	117	173	0.92
6	8	0.028	31	6.0	0.9	15	41	176	199	171	201	0.84
7	8	0.088	98	4.4	2.3	17	38	206	224	199	229	0.80
8	8	0.00025	0.27	12.6	1.7	15	41	232	255	223	256	0.82

Coding Sequence: atgaggactcacacaggtgaaaaaccatacaaatgtggaGATTGTGGGAAAGCGTTTTCAGCATCCTCAAGTTTATCAACCCACATTAAGACTCATACAGGTGAGAAGCCATATAAATGTGCTGAGTGTGATAAAGCATTTGCACAGTCCTCGGACTTAACTAAGCACATGAGGTTCCACACTGGTGATAAACCATACAAATGCACACATTGCAGTAAAGCATTTGCAGAATCGACAGACTTAACAAGGCACATAAGGActcatactggtgaaaagccatacaagtGTGGTGATTGTGGTAAAGGATTTTCAACATCGTCAAGTTTAACAAATCATATGAGAactcatacaggtgaaaaaccatacaagtgTGGTGATTGTGGTAAAGCATTCCCAACATACTCAAGTTTATCAACTCACAAAAAGACTCACACAGGTGAAAGGCCATACAAATGCAGtgagtgtgataaaactttTTCAACAACTTCAAATTTATCAACCCACATGAAGagtcacacaggtgaaaagctaTATAGATGTGATATGTGTTATAAAACATTCTTACAATCTTCAGACTTAACGAGGCACATGAGGTCTCACACTGGTGATAAACCATACAAATGCAGCgagtgtaataaaacattttcaacctCCTCGGGTTTAAATAAACACACGAGGactcacacaggtgaaaaaccatacaattgTGGTGAGTGTGGTAAAACATTCTCACAATCCTCAAACTTGATAACCCACATTAAGACACACAAATGA
Protein Sequence: MRTHTGEKPYKCGDCGKAFSASSSLSTHIKTHTGEKPYKCAECDKAFAQSSDLTKHMRFHTGDKPYKCTHCSKAFAESTDLTRHIRTHTGEKPYKCGDCGKGFSTSSSLTNHMRTHTGEKPYKCGDCGKAFPTYSSLSTHKKTHTGERPYKCSECDKTFSTTSNLSTHMKSHTGEKLYRCDMCYKTFLQSSDLTRHMRSHTGDKPYKCSECNKTFSTSSGLNKHTRTHTGEKPYNCGECGKTFSQSSNLITHIKTHK

Sequence clustering based on sequence similarity using MMseqs2