Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.06 67 4.9 1.4 14 41 5 29 2 31 0.80

2 10 0.0026 2.8 9.3 3.6 17 41 36 57 30 59 0.87

3 10 0.013 15 7.0 3.9 17 41 64 85 57 87 0.84

4 10 0.002 2.2 9.7 1.4 18 41 93 113 88 115 0.88

5 10 0.011 12 7.3 0.1 17 41 120 141 114 143 0.87

6 10 0.018 20 6.6 0.2 17 41 148 169 142 171 0.86

7 10 0.1 1.1e+02 4.2 2.9 17 41 176 197 169 199 0.85

8 10 0.16 1.8e+02 3.5 1.9 17 38 204 222 197 227 0.77

9 10 0.0017 1.9 9.9 3.3 13 41 228 253 217 255 0.80

10 10 0.0037 4.1 8.8 0.2 17 41 260 281 254 282 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.06	67	4.9	1.4	14	41	5	29	2	31	0.80
2	10	0.0026	2.8	9.3	3.6	17	41	36	57	30	59	0.87
3	10	0.013	15	7.0	3.9	17	41	64	85	57	87	0.84
4	10	0.002	2.2	9.7	1.4	18	41	93	113	88	115	0.88
5	10	0.011	12	7.3	0.1	17	41	120	141	114	143	0.87
6	10	0.018	20	6.6	0.2	17	41	148	169	142	171	0.86
7	10	0.1	1.1e+02	4.2	2.9	17	41	176	197	169	199	0.85
8	10	0.16	1.8e+02	3.5	1.9	17	38	204	222	197	227	0.77
9	10	0.0017	1.9	9.9	3.3	13	41	228	253	217	255	0.80
10	10	0.0037	4.1	8.8	0.2	17	41	260	281	254	282	0.87

Coding Sequence: ATGAACTCCGATGAAAAATTGCACCAATGTGTAGAGTGTGACAAATTGATGTCGCAATTCTCAAACTTAATGACTCATATGAGGACTCACACCggtgagaagccatacaaatgtgttgagtgtgagaAAACGTTTACTACATCCTCTTGCTTAACCAgccacatgaggactcacaccggtgagaagccatacaaatgtgtcgagtgcTGTAAAACGTTCTCGCAATCCTCAAACTTAACATCGCACATGAGGACTCACTAtggtgagaagccatacaaatgttttGAGTGTGAGAAAACATTCGCTACATCCTCTTGCTTATCCAGCCACATTAGAACTCACAccggtgagaaaccatacaaatgtgtagagtgtgataaaGAATTCTCAGATTCCTCAGCGCTACGAAatcacatgaggactcacactggtgagaagccgtacaaatgtgtagagtgtgataaaGAATTTTCAGATTCCACAACATTAAGAAATCAtgtgaggactcacactggcgagaagccatacaaatgtgcgGAGTGTGAAAGAACTTTCACTACATCCACTCACTTATCCAGACACATTAGATCTCACACTGGcgagaagccatacaaatgtgcttTGTGTGAGAAAACATTCGCAACGGCTTCTCATTTATCCAGACACAGtagaactcacactggtgaaaagccatacaaatgtgatgAGTGTGAGAAAACATTCAGTACAACCTCATCCTTATCCAGACACATTAGAACTCACACCggtgagaagccatacaaatgtgtagagtgtgataaaGAATTCTCAGATTCGTCAACATTAAGAAATCACATGAGGTCTCACGCTAGTTATAAACTGTAG
Protein Sequence: MNSDEKLHQCVECDKLMSQFSNLMTHMRTHTGEKPYKCVECEKTFTTSSCLTSHMRTHTGEKPYKCVECCKTFSQSSNLTSHMRTHYGEKPYKCFECEKTFATSSCLSSHIRTHTGEKPYKCVECDKEFSDSSALRNHMRTHTGEKPYKCVECDKEFSDSTTLRNHVRTHTGEKPYKCAECERTFTTSTHLSRHIRSHTGEKPYKCALCEKTFATASHLSRHSRTHTGEKPYKCDECEKTFSTTSSLSRHIRTHTGEKPYKCVECDKEFSDSSTLRNHMRSHASYKL

Sequence clustering based on sequence similarity using MMseqs2