Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.1 1.2e+02 4.1 0.5 18 41 9 29 6 31 0.79

2 10 0.011 12 7.3 1.8 13 41 32 57 21 59 0.82

3 10 0.0012 1.3 10.4 0.4 17 40 64 84 58 87 0.88

4 10 0.081 90 4.5 0.2 17 41 92 113 85 115 0.82

5 10 0.0011 1.2 10.5 2.9 5 41 109 141 105 143 0.85

6 10 0.0042 4.6 8.6 0.3 15 40 146 168 142 171 0.87

7 10 0.00049 0.54 11.6 0.6 17 41 176 197 169 199 0.88

8 10 0.1 1.1e+02 4.2 0.3 17 40 204 224 198 227 0.84

9 10 0.15 1.7e+02 3.7 5.1 2 40 218 252 217 255 0.82

10 10 0.09 1e+02 4.4 0.7 17 38 260 278 254 280 0.77

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.1	1.2e+02	4.1	0.5	18	41	9	29	6	31	0.79
2	10	0.011	12	7.3	1.8	13	41	32	57	21	59	0.82
3	10	0.0012	1.3	10.4	0.4	17	40	64	84	58	87	0.88
4	10	0.081	90	4.5	0.2	17	41	92	113	85	115	0.82
5	10	0.0011	1.2	10.5	2.9	5	41	109	141	105	143	0.85
6	10	0.0042	4.6	8.6	0.3	15	40	146	168	142	171	0.87
7	10	0.00049	0.54	11.6	0.6	17	41	176	197	169	199	0.88
8	10	0.1	1.1e+02	4.2	0.3	17	40	204	224	198	227	0.84
9	10	0.15	1.7e+02	3.7	5.1	2	40	218	252	217	255	0.82
10	10	0.09	1e+02	4.4	0.7	17	38	260	278	254	280	0.77

Coding Sequence: ATGCATACCGGTGGAAAACCTTACATATGTGTTCAGTGTGATAAAACCTTTTCACAGTCCTCAAAATTAACAAtccacatgaggactcacactgctgaaaagccatacaaatgcgTTGAGTGCGATCAAACATTTTCCCAATCCTCAAACCTAGCGAGCCatatgaggactcacactggtgaaaaaccgtacaaatgtgtcgagtgtgataaaacattctcaaaatCGTCAAACTTAATAgagcacatgaggattcacactggcgaGAAACCGTTCAAATGTGACGAATGTGATAAAACGTTCTCACTATCCTCAGCCTTAACAAAGCACGtgagaactcacactggtgaaaagccatacaaatgtgttgaatgtgatagaACATTCTCACAATCCTCAAATTTATCAAGCCACCTAAGGTGCCACAAAGGAGAAAAAACATACAAATGTGCTGACTGTGATAAGACATTTTCACAATACTCCAACTTAATACAGCACAttaggattcacactggtgagaagccattcagatgtgttgagtgtgataaagcaTTCTCAAGAATCTCAAATTTAACAAAGCACATGAGGACCCACACTGGTGAACAGccgtacaaatgtgttgagtgtgataaagcaTTCACACAATCCTCAAAGTTAACGcagcacatgaggattcacactggtgagaaaccgtacaaatgtgttgagtgtaatAAAATGTTCTCACAATGCTCAAATTTAACTGCACACATGatgactcacactggtgagaaaccatacaaatgtgtcgagtgtgataaaacattctcaagaTACTCAAATATAACGAGACACACAAGGATTCACACCGGGGGGAAAACATAG
Protein Sequence: MHTGGKPYICVQCDKTFSQSSKLTIHMRTHTAEKPYKCVECDQTFSQSSNLASHMRTHTGEKPYKCVECDKTFSKSSNLIEHMRIHTGEKPFKCDECDKTFSLSSALTKHVRTHTGEKPYKCVECDRTFSQSSNLSSHLRCHKGEKTYKCADCDKTFSQYSNLIQHIRIHTGEKPFRCVECDKAFSRISNLTKHMRTHTGEQPYKCVECDKAFTQSSKLTQHMRIHTGEKPYKCVECNKMFSQCSNLTAHMMTHTGEKPYKCVECDKTFSRYSNITRHTRIHTGGKT

Sequence clustering based on sequence similarity using MMseqs2