Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.017 18 6.7 1.0 13 41 8 33 2 35 0.79

2 6 0.011 12 7.3 0.7 17 41 40 61 29 63 0.81

3 6 0.01 11 7.4 0.6 17 40 68 88 62 97 0.87

4 6 4.7e-06 0.0052 18.1 2.5 5 41 85 117 81 124 0.86

5 6 8.5e-05 0.094 14.1 0.7 18 41 125 145 118 146 0.89

6 6 0.059 66 4.9 0.8 18 40 153 172 149 178 0.78

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.017	18	6.7	1.0	13	41	8	33	2	35	0.79
2	6	0.011	12	7.3	0.7	17	41	40	61	29	63	0.81
3	6	0.01	11	7.4	0.6	17	40	68	88	62	97	0.87
4	6	4.7e-06	0.0052	18.1	2.5	5	41	85	117	81	124	0.86
5	6	8.5e-05	0.094	14.1	0.7	18	41	125	145	118	146	0.89
6	6	0.059	66	4.9	0.8	18	40	153	172	149	178	0.78

Coding Sequence: atgcacatgagaattcacactggtgagaaaccatacaaatgtatcGAGTGTGAGAAAACATTCAGTACATTTTCTCTGCTGTCGAGACACGTTAGAACTCATGCTGATgtgaagccatacaaatgtgtagagtgtgataaaGAATTCTCTGAATCTTCATCTTTAAGAAGTCACATGACAACTCACACGggtgagaagccatacaaatgtgtagagtgtgataaaacattctcacaaaTGTCAAACTTGATAACACAcgtgagaattcacactggtgagaagccacACAAATGTGCAGTGTGTGAGAAAGAATTCTCAGATTCAACAAATTTAAGAAggcacatgaggactcacactggtgagaagccacACAGATGTGGAGAGTGTAATAAAGAATACTCGGATCCCTCAAATTTAAAAAggcacatgaggactcacacagGTGGGAAGCCTTACAAATGTGTAGTGTGTGAGGTGGCATTGAAAAACTCCACCAGCTTAACaaaacacatgaggattcacagtGGTCATAAACCATAG
Protein Sequence: MHMRIHTGEKPYKCIECEKTFSTFSLLSRHVRTHADVKPYKCVECDKEFSESSSLRSHMTTHTGEKPYKCVECDKTFSQMSNLITHVRIHTGEKPHKCAVCEKEFSDSTNLRRHMRTHTGEKPHRCGECNKEYSDPSNLKRHMRTHTGGKPYKCVVCEVALKNSTSLTKHMRIHSGHKP

Sequence clustering based on sequence similarity using MMseqs2