Basic Information

Gene Symbol
Trerf1
Assembly
GCA_034510155.1
Location
CM067377.1:194542669-194561446[+]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 8.3e-12 2.9e-08 35.0 0.1 2 46 960 1004 959 1004 0.96

Sequence Information

Coding Sequence
ATGTGCCGGACGCCATGTTTGCAGAACTCGAGCAGCGGGGGCGGCGCGGGCAAGTTGAATGGCGGCTCtgctgcggcggcggcggcggctgcggcggcggcgacgacggcGGCTTCCCGCCCCCAGCAGCCGCCTTCGGACCCCAAGCCCGTCGAGTGCAACCTGTGCCACCGCAAGTTCAAGAACATCCCCGCGCTCAACGGCCACATGCGGCTGCACGGAGGATACTTCAAGAAGGATTCGGAATCCAAAAAATGCGAGAAGAAGGAGGTTTCCGGTCCACCGTTGCAGACAGCTAGCATGAGCGTGAGGGCCCTCATAGAGGAGAAGATCATCCAGAAAAGGATCACAAATCCCCAGATCAGTACTCCCGCGCAACAAACTCAACCCCAgaagcagcagcaacagcagcagcagcaacaacagcagcagcaacagcaacagcaAGCATCCTCCACCTTCTCCACAAGTGTTCTGTGGGTCACTTCAATGAATAGAAACGTCACGTTTGCAGCGTCGGAGTCGATGAACGCGGCGGGCAAAGAGTCTGCGGACTTGAAGCTGTCGTCGTTCGCGGTGCCGGCGCCGCCGTCGCAGGCCGCGGAGAAGCTGTCGCGACGCCACTCGGACTGCGAGGGCGACGGCGCCGCCCTGGCGGAGCTGCTGCTGCAGAGGGGCAAGGGCGCCGTGAAGCGCGCCAGCTCCGACCCCGGACAGCAGCCGCTACAGCTCAGCTTCCAGGACGGCGGCAGCTATCTCACCTACCAGGCCACCGACGACGCCGGCTACTTCTCCCCGTCGCTGCAGGACGACGTCTTCCACCAGGTCTCTGTCCAGGACACGATGCTGCTGCACGGCGTCGACACGGCGCAGCTCGCAGAGAGCATCCAGTTCCAGGCGGCGTCTCTCCTGCAAGACCAGACGACCGCCGAGCAACTGCAGGACATAGCGTCTCTGGAGGACTACCAAGCGGCCACGGGGAGCCCTTCACAGTTCCACCAGACGCAGCACTCTGTACATCAGGATCTGCAGGCGGTCCTGAACTCGCCTCTGCCCGTGAGCCTAGCTGAGTTCGGCGCGTACGGCCAGCAAGGCATGGTGTCCTCTGGCTCTCCACTCCCCAAGGACCTGACCTCGGGGTACCAAGCGGCTAACTCTCCCTTGCACCACGTGCAGAGTTACGCCAACTCCCCTCTGGCCACCCAGTCGCCGCTGCCCTCGCCTCTCACGCACCACGACTCTCCCAGCTTCACGTACCCGACGCCCCCCGCCAGCCAGGAGGGCCAGTCGCCGTCCTTCGGACACAGCTCCCTCGTCACGAGCTCCCTGCCGATGTCGTCGCCTCACCAGACCACGGACAGCTTCGTTCAGTCTGTGATAGCACACGGTGGACACGTTCCTCCAGTGTCATCCCCTCTGTCCGCCGCCTTCTACACCTCCACCATGTCCAGCTCAGCCGCGGTGGAAGCGGCCCTCTCGGAGGTGCTTCCGGGAGAGACGATGGGCGGTCAGCCGTGTCTCGGCACCCACCTCCGTTCCCACGGCCTCAGCCTGTACCAGTCACTGGTAAACCCTTCGCCGCCCCCACAATCCCCGCTGTCGGCCACCCCCGTCCCTTCGCCGCTCTCCTTGTCCAGCGTCCCGGCCTCTTCGTCCTCCGTGTCCTCCCCGCTGCCTTCATCGGCGTACACCCCCACGCAGGGCCAGGTGTCGTTCCCACTCTCGCCTCACCACACCCTCCAGTCCCAGATGATGCCAAACTCCGAAGATCCTCTCCTGTCCAGCAGCCCCAAAGAATTCGGCAGCAGAAAGAAGTTCGATTTCGGTGGGCTCCATTCTTTCAAACTCGTGGGAAACGGCATGATGGACTTCGGGGTTCCGAATTCTGGCCTCACCGGAATTGTAGTGGACAGCAACGGCGAACTGAGGTTCCTGCAAACCACTAACCATGCGAAAAGTATCATGGTTACAGGCAACGGTGTGAACGGTGGAGTGGGGACTAATGTTGCCATGTTAGGAAACGGTGGTGTGACTCACAGGAAGACGGATTCCGACTCTAACAAAGTTCGCGGAGGTGGCAAAGGATGTGCAGGGAACGTGGGACCGCACAACAGTTACCAAAGCCGCAGCCAGAGACCCAAGCTTCAAGTTGCCCTGGACGGAGTCAAGGACGAGTGTGACGACGATGTCTTTCTCAGCCCTACGAGTATCCCTGCTAGTCCAGTACGAATGTTGCGCAAGAGGATGCGTCCGGAACCATTACATATTCCCTCAAATCCACAAGTGGTTTATCAGTCCAGATTGCGAGCACTTCGTAGTAGGGATCAAAATTCAGCTTCTCCACCACTACCTTACACGCCTGCACCCATGCTTTGTCCAGGCAGAAACTGTCAGGGCCTCTACTGGCAAGCTGTCACGCCTCCCTCAGCCTGGCCAAGCTCTACCACTCTGCCAGCCAGCAAAAGTGGGAATGGTGAGTCTCAAAACCCAGATGAGAATCAGCAAGGGCCATTGGCTGCAAATTCTGATGCTACTCCTGAAACAGATGCAACCCCACATATTAATATTGGGCCACAGTATCAGTGTGCTATACCAGCTTGCAATCCTGATCCTGAAAAGGCAAACAGAGAACCATCTTATGAACATTTGTTATGGGATCCAGGCATCAGCAAAGTGTGCACTGATTCTGAAATTGAGATGTACCTCGAGTTTGCTTGCTGTGCAGCCGTACCTGGTGGAGGACGTAACAAAGAATATGCCCTTCACTTGTTGAATATGTGCCATGGCAACATTCATCAAGCAATGTTAAAGCTAATGCAACCTACTCCAGCTCTGCCTCCTGGACACCCACTTCTTGCATATGAATATACTGAAAGTGATCGATGGAGTGCAGAGGAAATGGACATTTTCCATCAAGGCCTACTTAAGTATGATAAAGACTTCAGAAGTATATCGAATGAGATTGGCTCAAAAACTGTAAAACAATGTATTCAGTTCTATTATTTATGGAAGAAAGTGTGTCCTGAAGAGTACAAACGTCTACGTTTAATTCGGCGAAGACAAAATGTAGATTATAGCGGCCGAATTGACATGGAGTTCGAAGAAGTAAAAGTTGAAGAACCTCGGAACAGCATTCCTGCCAGTGAAGTAGAATTAGTATCAACCAGTTCTGAAAGTCGACTTTTTGTCTGTGAATATCCCGATTGTTCAGCTAGTTTCAATTCTCGAGCTGCACTGAATGGTCACATACGGATACATGGTGGCGGCGTTTGTGGGCGTTCACCTACACCCGACAAGCGACCAGCTGCCGCAACTCCTCCCACGCTCGCTGATATACTAGAGGAATTTCCATGCAAGATTTGTGGGAAagttttcaataaagtaaaaagcCGTAGTGCTCACATGAAATCTCATCGTCCTCCTGATGCAGAACCGAAGAAACCTAAGCTAGACAGTCACAAGATGGAAGTTGCTGAGCAGAACTTAGGACGATCAATGGGAGTTACATCAACAATTGGACTCGTGAGGCATACTTGA
Protein Sequence
MCRTPCLQNSSSGGGAGKLNGGSAAAAAAAAAAATTAASRPQQPPSDPKPVECNLCHRKFKNIPALNGHMRLHGGYFKKDSESKKCEKKEVSGPPLQTASMSVRALIEEKIIQKRITNPQISTPAQQTQPQKQQQQQQQQQQQQQQQQQASSTFSTSVLWVTSMNRNVTFAASESMNAAGKESADLKLSSFAVPAPPSQAAEKLSRRHSDCEGDGAALAELLLQRGKGAVKRASSDPGQQPLQLSFQDGGSYLTYQATDDAGYFSPSLQDDVFHQVSVQDTMLLHGVDTAQLAESIQFQAASLLQDQTTAEQLQDIASLEDYQAATGSPSQFHQTQHSVHQDLQAVLNSPLPVSLAEFGAYGQQGMVSSGSPLPKDLTSGYQAANSPLHHVQSYANSPLATQSPLPSPLTHHDSPSFTYPTPPASQEGQSPSFGHSSLVTSSLPMSSPHQTTDSFVQSVIAHGGHVPPVSSPLSAAFYTSTMSSSAAVEAALSEVLPGETMGGQPCLGTHLRSHGLSLYQSLVNPSPPPQSPLSATPVPSPLSLSSVPASSSSVSSPLPSSAYTPTQGQVSFPLSPHHTLQSQMMPNSEDPLLSSSPKEFGSRKKFDFGGLHSFKLVGNGMMDFGVPNSGLTGIVVDSNGELRFLQTTNHAKSIMVTGNGVNGGVGTNVAMLGNGGVTHRKTDSDSNKVRGGGKGCAGNVGPHNSYQSRSQRPKLQVALDGVKDECDDDVFLSPTSIPASPVRMLRKRMRPEPLHIPSNPQVVYQSRLRALRSRDQNSASPPLPYTPAPMLCPGRNCQGLYWQAVTPPSAWPSSTTLPASKSGNGESQNPDENQQGPLAANSDATPETDATPHINIGPQYQCAIPACNPDPEKANREPSYEHLLWDPGISKVCTDSEIEMYLEFACCAAVPGGGRNKEYALHLLNMCHGNIHQAMLKLMQPTPALPPGHPLLAYEYTESDRWSAEEMDIFHQGLLKYDKDFRSISNEIGSKTVKQCIQFYYLWKKVCPEEYKRLRLIRRRQNVDYSGRIDMEFEEVKVEEPRNSIPASEVELVSTSSESRLFVCEYPDCSASFNSRAALNGHIRIHGGGVCGRSPTPDKRPAAATPPTLADILEEFPCKICGKVFNKVKSRSAHMKSHRPPDAEPKKPKLDSHKMEVAEQNLGRSMGVTSTIGLVRHT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2