Emi012192.1
Basic Information
- Insect
- Euclidia mi
- Gene Symbol
- -
- Assembly
- GCA_944738845.2
- Location
- CALYKX020000104.1:1282167-1295603[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00032 0.088 15.5 3.0 1 23 371 393 371 393 0.97 2 11 0.061 17 8.3 0.1 2 23 401 423 400 423 0.92 3 11 0.011 3.2 10.6 0.4 1 23 427 449 427 449 0.97 4 11 0.02 5.5 9.8 0.4 1 23 454 477 454 477 0.97 5 11 0.0091 2.5 10.9 0.4 1 23 481 504 481 504 0.94 6 11 3.7 1e+03 2.6 0.1 1 13 516 528 516 532 0.88 7 11 0.07 20 8.1 0.5 2 23 558 580 558 580 0.95 8 11 0.00083 0.23 14.1 2.2 2 23 631 652 631 652 0.97 9 11 0.0029 0.8 12.4 0.4 2 23 658 679 657 679 0.96 10 11 8.3e-06 0.0023 20.4 1.3 1 23 685 707 685 707 0.98 11 11 5.9e-07 0.00016 24.0 1.0 1 23 713 736 713 736 0.98
Sequence Information
- Coding Sequence
- ATGGTGTCCTATTGCTGTGTCAAAGGATGCGGCAACAATAGCAACAACAAGAAGAAAGATCCGAGCTCCTTCGTATCATTTCATGCATTCCCTAGTAACATAGAGTCGAAAGCAAGATGGTTGAAAGCCATAGGACGTCCAAATTGGGTTCCACCAAGCCATGCTCGGATATGCAGTGTGCACTTCAACCATGAAGAGATTAACTATGAAGGCTGCAGAATAAGAATCAAAGATGTTGCCATACCAATAAACAATTTACCTCTAAATTCCAACTTTGAGGCAAGCAACATAGAGGTTTGCAGGATTTGCTTGGCATCTGATGTCAAGATGTATAGCCTAAGAGATGGCCACCTAAGCAGCTGTTTGGATGCTGTTGCAGGATTCAATGAAAACTACAATGTGGAGGGTCTTCCCCAGTATGTATGCTATCAGTGTGCTGCTTGTCTCATTAGATGCAACAAGCTTGTAGAAAAGAGCATAATCGCACAAGCTACCCTACTGGATATATTTGCCACAAATGGTCAGATAACTAAATCTTTAATCAAACAACTCAACAGGAATAAGCTCAATTTAACTTCCTCGCTAAGCAGTTGTCTTACAAAAAGCTATCATTATTACAAATATGGTGAACAAGACAATTTATTCAAAAACACAAAATATCCAGAAAGCACTGATAATTTAAACAATATATTTTTGAAAAAAGAAGATACTGGCTTAACATCAGAAGTAAAAGCAGACATAGAAAATGAAGTAAATGAAACCAGTAAATTTGAAACTGAACTAAATGAAAGTAAAATAACAGAAGAAAAGACATTAAATGATGAAAATTTGGATGATTGTCATGAAGACTCACCAATAGCTGATGCAATATCCGATGAGGATTTAAATAAGACTGAAGAAAATATTTCTAAATGTATCATATTTAATACAAAGAGATTGAAAACTAAAGAGTGCCTAGTAAGAAAAAAACCGACTAAAAGAAAAAGCGACGGTCTAACACCAGATGAAACAAATATGCAGAAATACTTCGACATTGTTAAACTATCGACACAGGAACAACGAGACGAATGGAAGAAATCAGCACGTCGGATTCTGTCGAGTAACACGGTGCACGAGTGTGAGGTATGCTCTAAAGTGTTCGCGCATCAAACTACATATCGCATACACCTCTCTAGCCATGACCCTAGTCGCGGTAAAGTCGAATGTCCGATATGCAAGCTGCGGTTCAAGAGCGATGTACTAGCGAAATCACACGCCAACCGAGCTCATTCTAAGAAATTCTACTGCAAGGCGTGCCCTAAAGTATTTAACAATGTTGGTGTGGCCAAGAAGCACCGTCGCTGGCACTTGGGCCACACGTACTCGTGCGGTCGGTGCGAGTTCCGCAGCGCGCACGAGTCCGCCCTCAGCGCGCATGTGCGGCGCGCGCATGCGCACTCACACGCCTGCGCGCTGTGCGGCCGCGCCTGTGTCAGTCGCAGGGGACTCAACCTGCATGTCGCCACTGCACACCCACACAACAAGGAGGGTGACATTAACGCGCAATTTCGTTGCGACTCATGCAACATCAACTTTGCGACGGAAGGGGCGAGACGCGTGTACTTACTAACTTCTAGTCAACACAGGAAAAAATCTGGATTCTGTTGCCCCACGTCGGAAGATCTCCGCGCCACGTGTAAGGTGTGCGGCTCACAGTGTGAGTCCCGCGCCGCGCTCGTGTCGCACGTGCGCGCCACACACGCGCGTGACAAGCGCTCGCGTACGCAGCGGGCGTACCCTACACCGTGCCAACTTTGCGGTGAGTCAATGTCATGTCGTCGCATGCACTGGCAGCACGTTCGCAGACAACATCCCAAACAGACAGACACCTACCGGCCCGTCGTCACCGCCGTCTGTGATACTTGCGGGAAGGGCTTCCAAAACTCCACAAAACTCCACTTGCATCAACTCCGACATCGTCCGCCTACGGTCCGCTGCGACAGCTGTCCTCGCTTGTTCTACGACAAGTACGCTCTATCGCGACACGCCACCACACACGACACGATCAAACCGCACCAGTGTCGAACTTGTGGCAGGGCCTTCAAACTACGCGGCAATCTGGAGAGGCATGCAAGGGTACACACAGACATCGCTCCGTACGAATGCACGATGTGCGGTAAAAAATTCAAGTATTCGTCAAGCGTGAATCTGCATATACGCACCGTTCACTACAAACTGCCGCATCCTCCTAGAAAAAAGAGGCCTAAATCTGCTAGAGATACAAATACTTGTGCTGACAATACAGAATGTCCATAA
- Protein Sequence
- MVSYCCVKGCGNNSNNKKKDPSSFVSFHAFPSNIESKARWLKAIGRPNWVPPSHARICSVHFNHEEINYEGCRIRIKDVAIPINNLPLNSNFEASNIEVCRICLASDVKMYSLRDGHLSSCLDAVAGFNENYNVEGLPQYVCYQCAACLIRCNKLVEKSIIAQATLLDIFATNGQITKSLIKQLNRNKLNLTSSLSSCLTKSYHYYKYGEQDNLFKNTKYPESTDNLNNIFLKKEDTGLTSEVKADIENEVNETSKFETELNESKITEEKTLNDENLDDCHEDSPIADAISDEDLNKTEENISKCIIFNTKRLKTKECLVRKKPTKRKSDGLTPDETNMQKYFDIVKLSTQEQRDEWKKSARRILSSNTVHECEVCSKVFAHQTTYRIHLSSHDPSRGKVECPICKLRFKSDVLAKSHANRAHSKKFYCKACPKVFNNVGVAKKHRRWHLGHTYSCGRCEFRSAHESALSAHVRRAHAHSHACALCGRACVSRRGLNLHVATAHPHNKEGDINAQFRCDSCNINFATEGARRVYLLTSSQHRKKSGFCCPTSEDLRATCKVCGSQCESRAALVSHVRATHARDKRSRTQRAYPTPCQLCGESMSCRRMHWQHVRRQHPKQTDTYRPVVTAVCDTCGKGFQNSTKLHLHQLRHRPPTVRCDSCPRLFYDKYALSRHATTHDTIKPHQCRTCGRAFKLRGNLERHARVHTDIAPYECTMCGKKFKYSSSVNLHIRTVHYKLPHPPRKKRPKSARDTNTCADNTECP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00677692;
- 90% Identity
- iTF_00677692;
- 80% Identity
- iTF_00677692;