Emi069645.1
Basic Information
- Insect
- Euclidia mi
- Gene Symbol
- -
- Assembly
- GCA_944738845.2
- Location
- CALYKX020000900.1:2285618-2316607[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00026 0.074 15.7 2.6 1 23 186 208 186 208 0.98 2 12 0.029 8 9.3 3.7 1 23 216 239 216 239 0.94 3 12 0.0034 0.94 12.2 3.4 1 23 341 363 341 363 0.99 4 12 0.00033 0.093 15.4 3.5 2 23 372 394 371 394 0.96 5 12 0.042 12 8.8 2.5 1 23 398 420 398 420 0.98 6 12 0.0015 0.43 13.3 2.2 1 23 425 448 425 448 0.98 7 12 0.4 1.1e+02 5.7 1.6 3 23 454 475 453 475 0.86 8 12 0.077 22 7.9 0.0 3 20 496 513 495 515 0.93 9 12 1.4 4e+02 3.9 0.1 2 23 561 583 561 583 0.93 10 12 2.1e-06 0.00058 22.3 0.9 1 23 592 614 592 614 0.98 11 12 0.0012 0.33 13.6 0.8 3 23 622 642 620 642 0.96 12 12 0.00059 0.16 14.6 5.7 1 23 648 671 648 671 0.98
Sequence Information
- Coding Sequence
- ATGAAGATGATAACAAAATCGAATCTCACTGACTTCAACCGCAATCGCTTTGACATAATGCCACCTCTGTCATACATGAATTTAGAAAAGGCTCACTACGAAGAAGCCAAGTTTCAATGGACAAGGCATAATCGTGTCCCACGTTTTAACCCCACATCGTTTGAAACTATACCGATAATTCACTGTTCCACATTAACCCCAGAAGACACATTCAACTCGGTAACCAACATTTATAATGAAGACGTAAAAGACACTGATATAAAGAATGATATTGAAATAGAAGTAAATCAAGAGGCTAATCCGAGTTTTACTTTAGAGAAAGATGATTATTTAGTTGAGTCAACGTCTAATGTGGATATGGGAGACTCTTTTATGGATAACGATGAGCTGTATGTCAGTGAAAATGAACAAGATGGAGAAACAAACAGTTCGATATGTAAAGATTCTAATATAGATGGTTCAAATTTGGACGAAGAGTATGCTATGATGATTCCTATATCCGTTAAAGAGGCTAAGGCTGCTATAGAGGTGTATAAAATGTTCAGTCACGGGAAGTATCACTGTGAGATATGTAAGAAACCGTATTTCAATGAAAACAGGCTGAGGATACATATGAGGATGCATGATAAGCACGTAAGTGGTACCTATCACTGTGGCCTGTGTAACTATTACTACAAAACTGAGTTTTTACTAAAAACTCACATGACTGAAAAACATATGTACAAGTATGTGTGTAGGAAATGTCCTGAAGTCAATTTTGATAGAACCTCAGCAAAACAGCACTTCATATGGTCGCATCTACAAAAGGGAAGCAAGAAACACGCCAATTGGTACGAATCAAGACCCACTTGGCTCAGTTCTAAGGGAGGGAAGCGGGTAAAGGGCGTGGTCACACTCAAACCTGTCAGGAAAATGAAGAAAGTACCAGAAGACTTCTTAATTTACTCTCCTATATTACATGAAGAACAGTATTCTTTGATTCTGGAGAGACAGAACTCGAAAAACTATAGGGAGGCCAAGTTTAAGTGCAACTTATGCTATAGAGGATTTAGAGAAATGTTAACTTATAATAAGCATATGAGGAAACATAATCCGCAATTCTCAGGCCCCCTACAATGTGATATGTGCAAGCTACACTTCAAGGACCAACGCAAGCTGTACAAACATATGAATATAACGCATCTCTTCAAATATTCTTGTCAAATGTGTAGCTACGTATGTTATAACAGGGGTCAAGCACAAATGCACTACAGATGGCACAAAAATGTCACCTACCAGTGCCCGCACTGTAAAATGGAATTCATGAAAGCGTCTACCCGTCTGACTCACATCCGAGTCAAACATCCGTCCATGAACATCTGCAATCTGTGTGGACACAGCTTCGTCAGTGAGACAGGACTGTACTGTCACAAGCAAATCGCGCACAGCACAGAGGAAATAGAGCTAAGCGCATCGGTAAGCGTCGACAAGTCCGACCCAGCGTATTGCGCGGACTGCGACATACAGTTCGTCAACGAGGCCGCCTTCAACACGCACCTCGGCAGCTCCTACAAACACGCCACTACTAACCTGTCAAGTAAGCCGTCCCGCCGTGTGAAGTGCGAGGGCGGGCGCAAGCGTGGCCGACCGCGACGCGGACTGTGCTCCGCCATCGTGAACAACGGCGTCACTACTGCCAACACCTGTGAAGTCTGTAACATCGTGTTAGTGAATGATGTGCAGGCTCGCAAGCATTACGAGTCAGAACATCCAGACACTGAGTTCCTGAAGCGATATATGTGCGATGTATGCGGGCATACTACAAGGCAATACGCGAACCTGATAGTGCATATGCGGACACATACGAACGAAAAGCCTTACGGGTGTCCACACTGCGACCGAAGGTTCAACATGCCCAGTAACAGGGATAGGCATCTTGTGGTACACACAGGTGAGAAACGCTATCAGTGTCAGCACTGCAACCGTCGGTTCACACAGAGTAGCGCCTGCAAGCTGCACATACAGACTGTTCATCTGAAGATACCGTACGCGCCTTGGAATAAGAAGAACAGGCGACGGAGAAAGGAACTAGAGACTGCGAGTATAACAGCTACGTCGGTAATACCGCCGGCTCCGCACAAACTGGCGTTCGATTCCCAGGGCGACTACCTCAACGCCTACATCACTTATAACGACGAATGA
- Protein Sequence
- MKMITKSNLTDFNRNRFDIMPPLSYMNLEKAHYEEAKFQWTRHNRVPRFNPTSFETIPIIHCSTLTPEDTFNSVTNIYNEDVKDTDIKNDIEIEVNQEANPSFTLEKDDYLVESTSNVDMGDSFMDNDELYVSENEQDGETNSSICKDSNIDGSNLDEEYAMMIPISVKEAKAAIEVYKMFSHGKYHCEICKKPYFNENRLRIHMRMHDKHVSGTYHCGLCNYYYKTEFLLKTHMTEKHMYKYVCRKCPEVNFDRTSAKQHFIWSHLQKGSKKHANWYESRPTWLSSKGGKRVKGVVTLKPVRKMKKVPEDFLIYSPILHEEQYSLILERQNSKNYREAKFKCNLCYRGFREMLTYNKHMRKHNPQFSGPLQCDMCKLHFKDQRKLYKHMNITHLFKYSCQMCSYVCYNRGQAQMHYRWHKNVTYQCPHCKMEFMKASTRLTHIRVKHPSMNICNLCGHSFVSETGLYCHKQIAHSTEEIELSASVSVDKSDPAYCADCDIQFVNEAAFNTHLGSSYKHATTNLSSKPSRRVKCEGGRKRGRPRRGLCSAIVNNGVTTANTCEVCNIVLVNDVQARKHYESEHPDTEFLKRYMCDVCGHTTRQYANLIVHMRTHTNEKPYGCPHCDRRFNMPSNRDRHLVVHTGEKRYQCQHCNRRFTQSSACKLHIQTVHLKIPYAPWNKKNRRRRKELETASITATSVIPPAPHKLAFDSQGDYLNAYITYNDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00282852; iTF_00281806;
- 90% Identity
- -
- 80% Identity
- -