Emi061479.1
Basic Information
- Insect
- Euclidia mi
- Gene Symbol
- su(Hw)
- Assembly
- GCA_944738845.2
- Location
- CALYKX020000721.1:3868445-3895061[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0021 0.58 12.9 0.3 1 20 47 66 47 68 0.94 2 19 0.0002 0.056 16.1 3.7 1 23 80 103 80 103 0.97 3 19 0.15 41 7.1 0.3 3 23 112 133 111 133 0.97 4 19 1.9e-05 0.0054 19.3 1.0 1 20 138 157 138 159 0.93 5 19 8.8e-07 0.00025 23.5 0.2 1 23 170 193 170 193 0.96 6 19 6.1 1.7e+03 2.0 6.1 1 23 199 222 199 222 0.93 7 19 0.0038 1.1 12.1 2.2 1 23 229 251 229 251 0.98 8 19 0.023 6.3 9.6 0.1 1 23 256 278 256 278 0.97 9 19 2.1e-05 0.0058 19.2 4.8 1 23 284 306 284 306 0.98 10 19 0.00037 0.1 15.2 0.2 3 23 311 331 309 331 0.96 11 19 1.1 3e+02 4.3 0.0 8 23 349 364 339 364 0.93 12 19 4.6e-05 0.013 18.1 3.7 1 23 370 392 370 392 0.97 13 19 1.4 3.8e+02 4.0 0.2 3 23 400 423 399 423 0.83 14 19 8.8 2.5e+03 1.5 0.3 12 23 435 447 434 447 0.89 15 19 8.8 2.5e+03 1.5 0.3 12 23 459 471 458 471 0.89 16 19 8.8 2.5e+03 1.5 0.3 12 23 483 495 482 495 0.89 17 19 8.8 2.5e+03 1.5 0.3 12 23 507 519 506 519 0.89 18 19 8.8 2.5e+03 1.5 0.3 12 23 531 543 530 543 0.89 19 19 8.8 2.5e+03 1.5 0.3 12 23 555 567 554 567 0.89
Sequence Information
- Coding Sequence
- ATGCCTCCGAAACGCAAAAAAGTAGGCAGACCACCAGGTTCCAAAAATAAGAAATCAACCAAAAAAGCTTCGAACAAGTTGATCAAAATTAAGACGGAGAAACACGACAAAGCTCCAAACGTTATCAACGCTAAGGAACATGAATGTAGTATTTGTAACAAGTATTTTCCAACAGTCCAAGCACTAAACAAACATAAAGCGTTAGAATTATCTCAGGTTATTTATACGAAGTCTGCATATGTTTGCAAAGAATGCCCCAAGAAGTTCAGATTCCATAAGAGCTTCAAAGAGCATCTGCTTATGGAACATTCCAAGCTACCTGACAGTGTTGCTTGTGATCAATGCACAGTGCGCTGTCCAGATAAAGAAGTATTAGCGGAACATATCAAAAAGGTCCATGAAAGAGATATATTTCTGTGTCCGCATTGCAATAAGGAGTTTGTGAGACAATCTCATGTGTTGCGGCACATGGCACAGAGTGGATGTGATGGACAGGCTGTTAATACTTATGCATGTGAGATATGTAACGCAACATTTTCCAGAAAAGACAATTTATCAGTCCACATACGGTTGCAACATATTTTCAGACGAGATTTCGTGTGCAAATACTGTTTGTTCAACACAAAGAACTTTTCAAAATTGGTCAATCACTGGCACCATTACCACTCAGACACACCGGATCAGTACCAGTGTCATGAGTGTGGAAAATGGACCTGTTCCCGTGCTGCTATGACAAAGCACCTTGAAATCCACGGAGAGAAGAAATATGCGTGTGATGTGTGTGGGTACAGCACGTTCACGGTGGAGGTGATGCGGCGCCACGTCCTGACGCATGTGCAAGACAAGCCGCACAAGTGCCACCTCTGCGACAAGTCGTACATCCAGCGCGTGCAGCTGCAGCGACACCTCGAGAAGCACACCGGCAGCATCTGCCTCAAGTGCGGGGAGACCTTCGCCTCGAGAGCTAAAATGCTGGTTCATATGCGAGATCACATGGGCCTGGATAAGTTGGTGTGTCCAATCAAATCATGTGCGTATTCGACGAAAGAGTTCATGAACGAAGCTAGCTTGACCAATCACCTCAACGTGCATTTAGAAGAAAAACCGCACAGCTGCGAGGTGTGCGACAAGAAGTTCCACTCGGAGGTGAACCTGCGGCGCCACCTCGACACTCACACGCTGGAGCGTCCGCGGCGCTGCATGTACTGCGTGTCGGCGCGAGCCTACGTGCGCGGCGAACAGCTCATCCGCCACGTGCGCAAGTCGCACCCCGCCGTGTTCCGCGCGCACCTGCTCCACGTGCGACAGGTCATGCTCATCCGCCACGTGCGCAAGTCGCACCCCGCCGTGTTCCGCGCGCACCTGCTCCACGTGCGACAGGTCATGCTCATCCGCCACGTGCGCAAGTCGCACCCCGCCGTGTTCCGCGCGCACCTGCTCCACGTGCGACAGGTCATGCTCATCCGCCACGTGCGCAAGTCGCACCCCGCCGTGTTCCGCGCGCACCTGCTCCACGTGCGACAGGTCATGCTCATCCGCCACGTGCGCAAGTCGCACCCCGCCGTGTTCCGCGCGCACCTGCTCCACGTGCGACAGGTCATGCTCATCCGCCACGTGCGCAAGTCGCACCCCGCCGTGTTCCGCGCGCACCTGCTCCACGTGCGACAGGTCATGCTCATCCGCCACGTGCGCAAGTCGCACCCCGCCGTGTTCCGCGCGCACCTGCTCCACGTGCGACAGGTCATGGGTGCTACAAGCAATCCATCGGACAGAGTGAAGAAATCAGAGATAGAATCAATCCTAAACTTGTTGGATGTGGAATGCGATCGTATCTTGCAAGGGTACAGTGGGTCGGGCGTGCTCTATGGAGGCATGCAGGAAGACGGAGAAGGAGCCGTTGTACCAATTGATAACTCGCCTGAAAAGAAACCAGAAAACAACCCTCTGATGTCTGAGGAGGAGCTAGCAGATAACTTGAACAAGCTGCTAGTGCAACTGATAGACACGAAGACGCTCAGCTTGTTCGGTTGGCCCGATGAGACTGTCGATGTGCTGCTGGAGAAGGTGATCGAGCAGTGCGGCGCGCGGCCGGCGGACCGCGGGCGCTGGTCGCGCGTGCAGCGCCTGCGGGAGAACACCAAGCATCTGTTCCTCTACGTCATCGAGGACAAGACCATCACGCGCATGCTCGACACGCACACCATCGACCAGATCGTGCTGCACATACTCAAACAGGTGTCCGACGAGCCCACGGCTGCGCCTTGA
- Protein Sequence
- MPPKRKKVGRPPGSKNKKSTKKASNKLIKIKTEKHDKAPNVINAKEHECSICNKYFPTVQALNKHKALELSQVIYTKSAYVCKECPKKFRFHKSFKEHLLMEHSKLPDSVACDQCTVRCPDKEVLAEHIKKVHERDIFLCPHCNKEFVRQSHVLRHMAQSGCDGQAVNTYACEICNATFSRKDNLSVHIRLQHIFRRDFVCKYCLFNTKNFSKLVNHWHHYHSDTPDQYQCHECGKWTCSRAAMTKHLEIHGEKKYACDVCGYSTFTVEVMRRHVLTHVQDKPHKCHLCDKSYIQRVQLQRHLEKHTGSICLKCGETFASRAKMLVHMRDHMGLDKLVCPIKSCAYSTKEFMNEASLTNHLNVHLEEKPHSCEVCDKKFHSEVNLRRHLDTHTLERPRRCMYCVSARAYVRGEQLIRHVRKSHPAVFRAHLLHVRQVMLIRHVRKSHPAVFRAHLLHVRQVMLIRHVRKSHPAVFRAHLLHVRQVMLIRHVRKSHPAVFRAHLLHVRQVMLIRHVRKSHPAVFRAHLLHVRQVMLIRHVRKSHPAVFRAHLLHVRQVMLIRHVRKSHPAVFRAHLLHVRQVMGATSNPSDRVKKSEIESILNLLDVECDRILQGYSGSGVLYGGMQEDGEGAVVPIDNSPEKKPENNPLMSEEELADNLNKLLVQLIDTKTLSLFGWPDETVDVLLEKVIEQCGARPADRGRWSRVQRLRENTKHLFLYVIEDKTITRMLDTHTIDQIVLHILKQVSDEPTAAP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -