Emi004575.1
Basic Information
- Insect
- Euclidia mi
- Gene Symbol
- -
- Assembly
- GCA_944738845.2
- Location
- CALYKX020000042.1:2241607-2270039[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0013 0.35 13.6 1.1 1 23 183 205 183 205 0.99 2 11 0.76 2.1e+02 4.8 9.4 1 23 212 235 212 235 0.96 3 11 1e-05 0.0029 20.1 0.2 1 23 266 289 266 289 0.97 4 11 0.0015 0.42 13.3 0.1 2 23 298 320 298 320 0.96 5 11 0.012 3.3 10.5 0.1 2 20 331 349 331 351 0.95 6 11 1.7e-05 0.0048 19.4 1.3 3 23 361 382 361 382 0.99 7 11 1.1 3.1e+02 4.3 0.1 3 23 398 419 397 419 0.95 8 11 2.3e-05 0.0063 19.1 4.4 1 23 436 458 436 458 0.98 9 11 3.9e-05 0.011 18.3 0.0 1 23 464 486 464 486 0.97 10 11 8e-06 0.0022 20.5 3.2 3 23 494 514 492 514 0.96 11 11 0.00073 0.2 14.3 5.2 1 23 520 543 520 543 0.96
Sequence Information
- Coding Sequence
- ATGCATGATCTCAGCAATGAAACAACTGTTAAGTTAAAAGAAGATAACTTATTACCATTAGTCAAAGAAACTGCATCAACAGAAACTTCTATTAAAAATAAAACTTATGAACCAAAAACTAAAAAAATAAAAATAAAAAGTGAAATACCAGTCAATGAAGTAGATGAAAAATGTGATGTCAATGAATCTATGGATGACTTTCATGATAATGACTACAATAATATTGAATCTTCAGAAGATAATTTAATTGCAGGAAAACCATCACCAAAATCCAAAAGGAAAAGTAAAGCGTCAAAAAGTAAAAAAAAGCAAATTAAAACAGTTATAAACAGTGAGGACAATATAAGTGATGATGAGCCATTATCAAAATGTGCTACGAAGATCTCAAACATGAAAGAAAATCAAGTAAACAAGTCTCTAAATAAGAAAAACGGTCTGAATATAGAATTCTTTGATGATTATGCAACAGTAATGTTCCTTACACCAGATGATGCAAGAAAAGAATTATTGTCCAGAAAAGAATCTAGCAATTATAAAAGGTCTCCGTTCAAATGTGATTTTTGTTACAAGGGTTATGAAGCCAAGGCAGCTTTTGAGAATCATATGAAGAAACATAGTAAAGAATATGGCGAGTATGAGTGTGATCTCTGCCACCTAAGGTTTCCTAAACACATTTACTTGTGCAAACACAAACTGAGTTGTCACAAGAGGAAGTTTAGCTGTAAGCTGTGTCCGTATGTTTGTTATTGCATGTATCAAGCCCGAACACATGTCAGCCTACACAAAGGAAAGAAATATCCGTGTAAAGATTGTGGAGAAGTATTCAGTATGCCGAACAGTTTGCTAATGCACAAGCGCGTCAAACACTTGGACGAATCGGTGCCAGAAAACGTTTGTGACATCTGCGGGAATACTTTTGGATCGCCTAGAGGACTGTTTCTACACAGAATGAAGCTGCATAGAACGGAAAAGAACAATAAGCTAGGTCCAAAATGTGAAGAGTGCGGTGTACACTTTGCGTCAGAGGTGGCGTGGAAACGACATCTAGTACTGTCCTCCAAGCATACTGTTACTAATGGCTGCAAGTATTGCGGTGAAAGGTTCACGAATGTGGAAGAGTTGAAGAGTCACAAACGTACGCAGCATCCGCGCATCAAACCTAAGAGAATTGACAACAAGCTACCTGCCGCTTGTGCTGTGTGTAACAAATGGCTGTCAAGCCAGGTAGAATACAATGAACACGTGAGTACGGAACACCCACACTCTGAGGAAGCCAAGACGTTGAGCGACAATGATCCTACGCCATTCGTTTGTGAAGTGTGCGGACAGACTTTCAAGCAACAATGTTTCCTAACATACCACCAGCGCAAACACACGGGAGAGCGTCCGTACGCGTGCGGCGAATGTGGCAAAACATTCGTAATGGCGGGCGCGCTCGCTATACACCGCAACGTGCACGCGCGACACAGGCACCTCGCCTGCCATCTGTGCCACAGGGCCTTCTCGTTCAAGAGTGCGCTCAACAAACACATCAAGGTCCACCTCGGCATCCGTCCTCACAAATGCACGATTTGTGATAAAGGGTTCATTCACATGTGCGACCTCAAGCTGCACATTAAATACGTACACGATAAAGTACCTTGGCCGAAGAAGAAAAGCAAACGGAACGTCGACGATACCAACACTTTTGTAGAATATAATGGCGTCTGA
- Protein Sequence
- MHDLSNETTVKLKEDNLLPLVKETASTETSIKNKTYEPKTKKIKIKSEIPVNEVDEKCDVNESMDDFHDNDYNNIESSEDNLIAGKPSPKSKRKSKASKSKKKQIKTVINSEDNISDDEPLSKCATKISNMKENQVNKSLNKKNGLNIEFFDDYATVMFLTPDDARKELLSRKESSNYKRSPFKCDFCYKGYEAKAAFENHMKKHSKEYGEYECDLCHLRFPKHIYLCKHKLSCHKRKFSCKLCPYVCYCMYQARTHVSLHKGKKYPCKDCGEVFSMPNSLLMHKRVKHLDESVPENVCDICGNTFGSPRGLFLHRMKLHRTEKNNKLGPKCEECGVHFASEVAWKRHLVLSSKHTVTNGCKYCGERFTNVEELKSHKRTQHPRIKPKRIDNKLPAACAVCNKWLSSQVEYNEHVSTEHPHSEEAKTLSDNDPTPFVCEVCGQTFKQQCFLTYHQRKHTGERPYACGECGKTFVMAGALAIHRNVHARHRHLACHLCHRAFSFKSALNKHIKVHLGIRPHKCTICDKGFIHMCDLKLHIKYVHDKVPWPKKKSKRNVDDTNTFVEYNGV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -