Emi050639.1
Basic Information
- Insect
- Euclidia mi
- Gene Symbol
- -
- Assembly
- GCA_944738845.2
- Location
- CALYKX020000530.1:818323-833438[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.051 14 8.5 0.1 1 23 75 97 75 97 0.94 2 15 0.56 1.6e+02 5.2 0.0 2 23 121 143 120 143 0.92 3 15 0.00095 0.27 13.9 0.8 1 23 165 187 165 187 0.99 4 15 0.00037 0.1 15.2 0.5 3 23 193 213 191 213 0.96 5 15 0.0011 0.3 13.8 0.3 1 23 221 244 221 244 0.97 6 15 0.043 12 8.8 3.0 1 23 250 273 250 273 0.95 7 15 0.16 45 6.9 3.6 1 23 428 451 428 451 0.95 8 15 1.6 4.4e+02 3.8 0.1 2 23 476 498 475 498 0.91 9 15 0.22 61 6.5 0.1 1 23 522 544 522 544 0.96 10 15 0.00026 0.071 15.7 0.2 1 23 548 570 548 570 0.98 11 15 6.2e-05 0.017 17.7 0.4 1 23 575 598 575 598 0.96 12 15 0.0026 0.72 12.6 0.3 2 23 605 627 605 627 0.93 13 15 0.043 12 8.8 6.4 1 23 634 657 634 657 0.96 14 15 2.1e-05 0.0059 19.1 2.7 2 23 664 685 663 685 0.96 15 15 0.00011 0.031 16.9 1.7 1 23 691 713 691 713 0.98
Sequence Information
- Coding Sequence
- ATGGGCGAAATTGTTGCATCTGCCCCGGTGACGCCGACATCGCCGTCCACCGGGGCACATGACACACATTTAGACATAATCCATCCAATTTGCCCCAGTGCCGGGGCAGGGTCCGTCGAACAGAAAGTAAAATGGCGGCCTAAGTTTAACGATCAGAGAGATAACGCTGCTATCATACTTGAGTATTCAAACGCTTGTCCCTTTAGGTGGAAGAGGGGCGCGTTCACTTGCGCGTACTGCTCCCTCTCCTTCGGCGACTTTAGTGGCGTCAGGGACCACGTGATCGATCATCCAAATAGAGTAGAAGCCATGCGTCTAGCGCGCACCTACGCCAATCTCAAAGTGGAAATCACTGGCCTCAAATGCGAACTCTGTCTCGAATCAATGACTACGCTAGATGAACTAATCGACCATCTCATTGCCACTCATAATAAAACAATAAATAAAGATCATGGCATAGGAGCGACGCCTTTCTTCCTATCCGGCAAAGAGTACCAATGCGCTCTTTGCGAGGAAACCTTTGAACTTTTCTCAAAGTTAAATACACATTTGAATAAACACTATCCGAATAGTATATGCTTTCTGTGCGGCAAAGCGTTCTCCACTGTCCATAGGTTAAAAGCACATCTAGCTATTCACGAATCGGGCGATAGGGTTCAGTACAAATGCAGTAGATGCTCTGAAGTGTTCCCAACGAAAGCTTTAAGGAGCAATCACATGATATCGGCTCACGGAAAGGAATACAGATACAGGTGTCCATATTGCAACGATTCGTTCAAAAGTTACGGTGACAGAGGGAAGCATTTGAAACATTCGCACGGAAAGAAAATTGAGTATCCCTGTGACGAACCTACACATGACCAGGATTTTCTTAAAGAAAATAATGCTGAAACGACGGCCCAGCTCGCTGAAAGAACGAAAAATTTCACAGACCACGATATAAAAGCTAGGAAACGATCCAACTCGCCAATTCCAGACACGAAGCGAAGGATTGTGCCGCTATTCCAAGTAGAATACGACAGGAGCCTGTGTAGACCTCTCGGCACTCTAGTGGACTTCAATGCGCTCAGAAAGTCTTTCAAATCGATTTCTAGAGACCTTACTCCGTCCAGAAGTCCTTCGCCTGTTTATATACCGAGATCTCCGTCACCTTGTGTAGAGAAAACTGAATCTGTTAACATAGTCCAACCTAAACCTAAGAAAAATCCGGATATACGACAGAATGCCTTGGCCGTATTTGAATTCTCCACTGTGTATCCATTCGTTTATGGTAACAATAAATTCAAATGTTTTGTCTGTTCGCAACCGTTTCTGGATCTTCATCTGTTGAAAACTCACATGCATGAGTCTCACACGTTTCCTCCATTGAAGAGATTAGTCAATAACCGAAGAGAGAACGTCTTAAAAGTTGACGTAAGCGATATAACATGCAAAATATGTACGGCGAAACCACCTGACTTAGTTGAATTGAAACAACATCTGAAGGAAGTGCACGGCAAACCAATCAACTTAGATCTGCAAGACAACTTGATACCATTTAAACTAGAACTAATAGATGGCTCTTACAGATGTGTTATATGCGAGCAGAACTTTATAAAAGTAAGAATATTAGTGATACATATGAGTGTTCATTTCAACAACTACAGCTGCGAGATTTGTGGTTCAGGGTTCATGACTTTGAGGCTTTTGAAGAAGCATTTGGAAGTGCACGAAACTGGAAACTACCCATGCGACCGGTGTAACAAAGTCTTTAGTACGCCTTACAAAAGGACACTGCATATTCGAGGAGTACATTTAAAGCAGTATCCAAGAAGATGTCCAATATGCCCGGAGAGATTCAACTCGAACTATAAAAGGACTATTCATTTGCAAGATGTTCATAATCAGTCGACTAGAGTGCATAAATGTGAGACTTGTGGCCGGGGATTCAATTTGAAGTACCATTTGATCTGTCATACGCGTTCGGTGCATCTCCAGGAGCGGAATCAGCAGTGCGAAGTCTGCCAGCAGCGGTTTTGTAATAAAGAGTCACTGAAAAGACACATGGTTATACATACAGGAGAGAAGAATCATAAATGTGATGTGTGCGGCATGGCGTTTTTGAGAAGAAAGAATCTGAAGGATCATTTGCGGCTGCATAATATAGAATAA
- Protein Sequence
- MGEIVASAPVTPTSPSTGAHDTHLDIIHPICPSAGAGSVEQKVKWRPKFNDQRDNAAIILEYSNACPFRWKRGAFTCAYCSLSFGDFSGVRDHVIDHPNRVEAMRLARTYANLKVEITGLKCELCLESMTTLDELIDHLIATHNKTINKDHGIGATPFFLSGKEYQCALCEETFELFSKLNTHLNKHYPNSICFLCGKAFSTVHRLKAHLAIHESGDRVQYKCSRCSEVFPTKALRSNHMISAHGKEYRYRCPYCNDSFKSYGDRGKHLKHSHGKKIEYPCDEPTHDQDFLKENNAETTAQLAERTKNFTDHDIKARKRSNSPIPDTKRRIVPLFQVEYDRSLCRPLGTLVDFNALRKSFKSISRDLTPSRSPSPVYIPRSPSPCVEKTESVNIVQPKPKKNPDIRQNALAVFEFSTVYPFVYGNNKFKCFVCSQPFLDLHLLKTHMHESHTFPPLKRLVNNRRENVLKVDVSDITCKICTAKPPDLVELKQHLKEVHGKPINLDLQDNLIPFKLELIDGSYRCVICEQNFIKVRILVIHMSVHFNNYSCEICGSGFMTLRLLKKHLEVHETGNYPCDRCNKVFSTPYKRTLHIRGVHLKQYPRRCPICPERFNSNYKRTIHLQDVHNQSTRVHKCETCGRGFNLKYHLICHTRSVHLQERNQQCEVCQQRFCNKESLKRHMVIHTGEKNHKCDVCGMAFLRRKNLKDHLRLHNIE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01502364;
- 90% Identity
- -
- 80% Identity
- -