Emi054454.1
Basic Information
- Insect
- Euclidia mi
- Gene Symbol
- L
- Assembly
- GCA_944738845.2
- Location
- CALYKX020000590.1:997464-1002103[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.51 1.4e+02 5.4 5.8 1 23 3 25 3 25 0.97 2 15 6.9e-06 0.0019 20.7 4.1 1 23 31 53 31 53 0.99 3 15 2.1e-05 0.0059 19.1 0.1 1 23 59 81 59 81 0.98 4 15 0.00054 0.15 14.7 0.0 2 23 97 119 96 119 0.95 5 15 4.9 1.4e+03 2.3 0.1 9 23 150 165 146 165 0.93 6 15 0.25 68 6.4 0.0 3 23 218 238 217 238 0.97 7 15 0.13 37 7.2 0.0 3 23 253 273 252 273 0.91 8 15 0.00012 0.034 16.7 0.6 1 23 281 304 281 304 0.96 9 15 0.028 7.8 9.3 0.0 1 23 309 332 309 332 0.92 10 15 0.0044 1.2 11.9 0.2 1 23 393 417 393 418 0.95 11 15 0.00016 0.045 16.4 0.1 2 23 480 501 479 501 0.96 12 15 0.047 13 8.6 0.0 1 23 509 531 509 531 0.98 13 15 0.71 2e+02 4.9 0.3 1 23 635 657 635 657 0.94 14 15 0.0028 0.79 12.5 0.1 1 20 665 684 665 687 0.95 15 15 0.12 34 7.3 0.3 1 23 694 716 694 716 0.94
Sequence Information
- Coding Sequence
- ATGCCGTTCAGGTGCGAATTCTGTTCGCGACTGTTCAAGCACAAGCGCTCAAGAGACCGCCACGTTAAGTTGCACACTGGGGATCGGAAATACCGCTGCGCTCATTGCGAGTCTGCCTTCTCTAGGAGCGATCATTTGAAGATTCACATGAAGACACACGACAATCAGAAGCCTTTCCAGTGCACGGTGTGCAACCGCGGGTACAACACTGCCGCTGCTCTGACGTCACACATGCAAGGACACAAGCGCGACCGAGAGGGACGCGAGCCCGATCGCCGACGTGCGCTCCGGTGTTTGAGATGTGGCGATGCTTTTCGAAGGCCTGATTTGCTACAGGCACATATGGCAAGTGCACACGGCGTTGACGCTGCAGCCATGACGCCACCTAGACGAGTAGCTTCTCAGCCGCCGCCCACACTCCTCGCCTGCATCTACTGCACCCGCGACACCTTCACTAGTATGGAACAGTTGCAGCTCCACGTACGAGCTGCACACTCTGCTCTGCTCAATGGAGAGACTCCCTTACAATCTATAGATCAGCCAGCTCCCACTGACCTCAGTCGAAGAGCTACTGACGAAGGTCCGCTAGTGAAACGACCTCGTTCCGGTTCTGGAACACCACAGACGACACTATCACCAAGCACATTACTATGCAACCAATGTGATGCAGCCCTACCAGATTTTGAAGCATTTCGGGCTCATTTGAAGGGACATCTAGAGGAAGGGGGTGAACTGGGGCGATCCAGTCCAGCTCCGTGTGTTCACTGCGGAGCGACGTTTGCCGACGCAGCTGCCTCCGAACGGCACCTCACAGCACATTATCTGGGTGTCTCATGCGAGTACACATGCCACAGCTGCGCCCGAAGCTTCTCAGCGCCGGACGATTTACAGAAGCATCTCATGGAGCTACACGCTCATCATTTGTATCGGTGCGCTTTGTGCAAAGAAGTTTTCGACTCCAAAGTTGCTATTCAGGTTCACTTCGCAGTGGCTCATAGTGGCGAGAACAAGGTGTGGGTGTGTCGGTCGTGCGGTGCGGGGGCTGGCGCTTTACGCTCTGAAGCTGAAGGCGCGGCGCATGTTCGCACGCGCCATGCGAGCGCGGCACCTCGCTGCGCTTGCGGAGCGCTGTTAGCCGCCGGCGCCGTGCCTCGAGCACCTCGTCCTCACCGCGCCTACCGCTGCCCTGTACCCTCCTGCAATGATGCCTTCGCGGTGCAATACTTATTGGAAAGACACATGCAAGCGCACCACACGATGCCCCATCAGGTACTGAATGGTGATATAGCGAGACCGAAAAGGATGGATACAAGCAACGGTGGGGATGGCGGTGATGGGGAGAGGTCGCCCTGTACCCCTGGGGCTGAGAGTGGCGGTCCGCCTGCAGTGGCACCACCTAGTGAAGAGAGACGACGGAAGAACGGAGCTGTAGCGCTGCAGTGCGCTTACTGCGGCGAACGTACGCGCAGTCGCGCCGAGCTTGAAGCGCACACCCGCGCTCACTCCGGCGCCGCCGCTGCTCGACACAAGTGCCTCATATGCGATGAGGTTCTACCCTCGGCTGCGGTGCTAGCCGAACACAAACTCACACACTGCAAGGTGGTGTCCGGTGATACGTGTGCACGCTGCCGTGCTCGATTGTTATCTGAGGAATCGTTCCTGAATCACATGGCTCGGCATCACCCAGCACTGCCGGCCCCGTGCGTAGTGTGCCGGCAAACATTGGCTTCTGAGGCTGAAGCACGTCTTCACGCACGTTTTCATTTACGGCCAGGAGATGATGAGCAGAGGTGCGCCATTTGCTTACGAGCGTTGCCTGAAGGTGAAGCCGGTGAAGGTGCAAGAGCATGCTCCGCTTGTTACGCTCGCCACGCCGCGCCCCGTCCCCCTCCACCCGCCGACCACGACTGCCGCCTGTGTCGACGTGCGTTAGGTTCTCCCACCAGACTACAAGCCCATCTCATTGAACACACATTCGCGGGTATCGGTGCATTTACTTGTTATCTTTGCTCGGCGGTATTCACAAGCGCGGCGGGTCTGCAGCGTCACTTGCCCGAGCACGCGGCAGCTCCTCGACCGTACGACTGCGCTCGCTGCGGGTTGAAGTTCTTCTTCCGAGCGGAATTGGACAACCACGCGTTTGTGCACCTTGAGGAGGCGGAGATAGCTCAGCGAGCGTTTTATGAGGCTTATGCTCGCGGTGCAGCGTCAGCTTGGGCTGCTTTGGCTCCACCTGAACCACCGCGATCTTCGACGCCTCCACAAGAAGTAAAGAGAGAACCGGAAATTAAGGAGGAGAGGGGCAACGATGAGTATATTGAGGTGTCGTCTCCGCCGCCGCCGCAGCCGCCACCGGCGCCGCCCGCGGTGCCGTCGCCCCCAGCCGTCGTGAAGCAAGAGAAGCCGGACGAGGAATAG
- Protein Sequence
- MPFRCEFCSRLFKHKRSRDRHVKLHTGDRKYRCAHCESAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQGHKRDREGREPDRRRALRCLRCGDAFRRPDLLQAHMASAHGVDAAAMTPPRRVASQPPPTLLACIYCTRDTFTSMEQLQLHVRAAHSALLNGETPLQSIDQPAPTDLSRRATDEGPLVKRPRSGSGTPQTTLSPSTLLCNQCDAALPDFEAFRAHLKGHLEEGGELGRSSPAPCVHCGATFADAAASERHLTAHYLGVSCEYTCHSCARSFSAPDDLQKHLMELHAHHLYRCALCKEVFDSKVAIQVHFAVAHSGENKVWVCRSCGAGAGALRSEAEGAAHVRTRHASAAPRCACGALLAAGAVPRAPRPHRAYRCPVPSCNDAFAVQYLLERHMQAHHTMPHQVLNGDIARPKRMDTSNGGDGGDGERSPCTPGAESGGPPAVAPPSEERRRKNGAVALQCAYCGERTRSRAELEAHTRAHSGAAAARHKCLICDEVLPSAAVLAEHKLTHCKVVSGDTCARCRARLLSEESFLNHMARHHPALPAPCVVCRQTLASEAEARLHARFHLRPGDDEQRCAICLRALPEGEAGEGARACSACYARHAAPRPPPPADHDCRLCRRALGSPTRLQAHLIEHTFAGIGAFTCYLCSAVFTSAAGLQRHLPEHAAAPRPYDCARCGLKFFFRAELDNHAFVHLEEAEIAQRAFYEAYARGAASAWAALAPPEPPRSSTPPQEVKREPEIKEERGNDEYIEVSSPPPPQPPPAPPAVPSPPAVVKQEKPDEE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01437318;
- 90% Identity
- iTF_00822228;
- 80% Identity
- -