Emi050645.1
Basic Information
- Insect
- Euclidia mi
- Gene Symbol
- -
- Assembly
- GCA_944738845.2
- Location
- CALYKX020000530.1:884689-902081[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 25 5.1 1.4e+03 2.2 3.6 2 23 120 141 119 141 0.94 2 25 1.6e-05 0.0045 19.5 1.0 2 20 146 164 143 166 0.88 3 25 3 8.5e+02 2.9 2.1 3 23 215 236 213 236 0.91 4 25 0.17 48 6.8 0.1 2 23 262 284 261 284 0.91 5 25 0.63 1.8e+02 5.1 0.4 3 23 308 328 307 328 0.96 6 25 4.6e-07 0.00013 24.4 1.4 1 23 332 355 332 355 0.96 7 25 0.073 20 8.0 0.5 3 19 362 378 361 380 0.90 8 25 2.5 7e+02 3.2 0.1 1 22 388 409 388 411 0.83 9 25 0.00017 0.047 16.3 1.3 1 23 418 441 418 441 0.97 10 25 0.071 20 8.1 0.0 3 23 484 505 483 505 0.95 11 25 1 2.8e+02 4.4 0.1 2 23 532 554 531 554 0.93 12 25 5.9 1.6e+03 2.0 1.4 3 23 584 605 583 605 0.89 13 25 0.029 8.2 9.3 0.0 2 23 632 654 631 654 0.95 14 25 5.2e-05 0.014 17.9 1.5 3 23 721 742 720 742 0.98 15 25 0.43 1.2e+02 5.6 0.0 2 23 767 789 766 789 0.90 16 25 1.7 4.6e+02 3.8 0.6 3 23 814 834 812 834 0.89 17 25 0.00079 0.22 14.2 1.3 1 21 838 858 838 859 0.96 18 25 0.59 1.7e+02 5.2 0.1 1 23 900 923 900 923 0.94 19 25 0.86 2.4e+02 4.6 0.3 2 23 949 971 948 971 0.95 20 25 0.0049 1.4 11.7 0.8 2 23 995 1016 994 1016 0.95 21 25 0.00013 0.037 16.6 0.0 1 23 1020 1043 1020 1043 0.97 22 25 0.94 2.6e+02 4.5 0.6 1 23 1047 1070 1047 1070 0.96 23 25 8.4 2.3e+03 1.5 0.3 1 23 1075 1100 1075 1100 0.83 24 25 0.00019 0.052 16.2 2.0 1 23 1109 1132 1109 1132 0.97 25 25 0.001 0.29 13.8 0.4 1 23 1142 1165 1142 1165 0.95
Sequence Information
- Coding Sequence
- ATGTACATCGCGAAAAGGAACGCCCAGACCGTTTTACAATATGCCACTGCTTACCCCTTTAGACTCCCGGAGAGTTCCATCGTATGCGTGTACTGCTGCGAAAACTTTGACGACGGTCCTCTCTTCAGGATGCACATGGACTCCAACCATAAAGATGTGAACGTCAGAGTAGCATACGCCCATTTACATGAAGGCTACATAAAAGCAGACTGCACTGACATTCGCTGCAGACTCTGTTGCCAAACATTTGATAACGTAGACGAGATCGCTCACCACTTGAACCAAAAACATGACCAGAAAATAAACATGGAGTACAGCGTAGGCATACAACCATTTCGGATGGAGAAAGACAAGCTTTCATGCGCGATTTGTTGTACAAAGTGTTCTAATATACGGAGTCTAAGTAGACATATACAAGAGCACTTCTTTCAGTGCACTTGCGAGCTTTGCGGCAAATCGTTCGCCACATCCGCGTCTCTTCAAAAGCACCTTGAGTTTGCTTGCCCTTTCGTTCCAAAACAACGGAGGTGTAGAAAATACGATCACGTGATGCCCCCGCTAGCCATGGCGCGACGGAACGCCGAGTTTCTGATCACTCACGCCACCGTATACCCCTTCCGACTGCCCGACGCTCTCATTATGTGCGTATACTGCTGCGAAGAGTACCATGAACCCTCGACTTTCCGACAACACATGAGAGACGAACACGACGCCTTCAAAGCAAAAAACGCTTTCGCGCATTGCAACCACGAAGGATATCTTAAAGTTGACTGCAGTGAAATAAAATGTAGAATTTGCTCGGAATCTTTCGATAAAATAGAAACTGTAGCACGCCATTTGGCCGAAACACACGATGTGAAATACAACTTTGACGCACATTTAGGCGTTCATCCATATAGATTTGTACAAGAAAAGATCTTGTGCGGCGTTTGCGATGTTAACTTCCCTTGCATGAGGCAGCTGAGTCGACATATGGCTGTACACTTCCAGAACTTTACGTGTGACTACTGTGGAAAGTCATATACCACTAACTCTTCGTTACTGCAGCATCTCAGGTTCGTCCACACCACCGAAGGTAGAATCTGCAGAAAATGTAAGAAGACTTTCAAAACTCTGGAAGAGAAAAAGGAACATGTAGCTGCCACATCCAAGTGCTGGTTATACGCCTGCGGAGAGTGTAATCTGAGGTTTCTTACTTGGTACCTGAAAGAAGAACATTTAGTGCAAGTTCATGGGAAGTCAAAGAAGACTTATCCTTGTTCGGAATGTGAAAAGACTTTCGGCTCGAGAGGACAGTACAGAACACATTTCAATACCACACACTCGGATGTCAAATACGTCTGTTCTATTTGCGAAGTGCAACCGCATATAATGGCGAAAGAGAACGCAGAGATAGTGTTACAATATTCGACTGTATATCCGTTCATGGTACGGGCACAAGCTTTACTGTGCGTCTACTGCGAAGAGCAATACGAGGATCCCATCCAATACAGAAGACACATCGATGTTATTCACAAAAAGTTTTCCATAGCCGCTGCGTTCGCGCATATTGGGAATCGGAGAGACTTTCTTAAAGTTGACTGCACCAATTTACGCTGCAGACTCTGTTCAGAACCCTTCTCTAAAGTTAACGAAGTCGCTGAACACCTAGCAAAAGAACACAATCTTAAACTAAAACTGGATTACGAAATTGGTTTACAAATCTATAAGTTGGAGAAAGGAAACTGGTTGCGGGGGAAGGCTTTGCTTTGCGTCTACTGCTGCGAGGGTTACGAGGATCCCACTCATTATAGGAGGCATCTTGATGGTAACCATAAACAGTTCACCGTATCCACTGCCTTCGCACACATCGGCAGCGGCAAAGACTACCTCAAAGTTGACTGCACTAACCTAAAATGCCGACTTTGTGGCGAACCATTCGCAAACCTGGATGATGTAGCTGGACATCTCCTGAAAGAACACGATTCCAAGGAAATGCGTAAGCTGAGACTTGAATACGATATAGGGACCACATTGGAAATACACGGACGTAGAAACAGTGGGAATGACCCAAAAAAGAAAATAGTACTTGTATACCAGACGCCGCAGCGGCGAAACGCTGAACTGATTCTAACTTACTCAACTGCGTATCCGTTCAAAACCCGGTTTAGTCAAATCCTATGCTCTTATTGCCACGAGGAATATAGCACACTATCCGATTTGAGGTTACATATGAAAACAGAACACCGTAATTCAGATTTTAAGAACGTATTTTACCGAGCTAAGGATAACCTAGTAAAAATTGACATAACTAACTTAAAATGTAACATTTGTGGTCAGGATATGGACGATATTGATGAGCTTATGAGCCATTTATACAACGTGCATAACAAACCTGTCAAATTCAACGCTCGCTATGGCGTTCTACCCTACAAACAAGCAGGAAACGATGTTTGGATGTGCATATACTGTAATAAAACTTTTAACGAGTTCATTATTTTTAAGAGACATATTGTCACGCATTTCATGAACTACAGTTGTGATAAATGCGGAACTACTTTTGTATCTGATCATGCGTTAAGAGACCATCATCGACAGGTCAAATGCTTTAGGACTGCGTATAAAGCTCGGAATGGGCGGGTATTAAAACCTAGAACTAATGCCGAGATAATCCTCCAATGTTCCACAGCATCTCCCTTTAGAACTTGGAAAAGTAATTTCAACTGCGTATTTTGTAGAGTGCAAAGTAATGATCCCAGTGGTCTGCGACAGCACGTAGGAACAGTTCACGCCAATTATGACGTAAAAGCAGCATTTTACAAGAAGTTAGGGAAAGACTTTCTTAGCATTGATATAACTGATCTACAGTGCAAACTGTGTTTCATGCCTATAACAACTTTTGTAAGCCTTATCTACCATCTAAAGAATGATCACCAACAACCCATAAACGACGATGCTCAATTAGGTGTCCTGCCTTTTAGATTGAATGATGGATCTATTTGGAAGTGTACAATGTGTCCAAACGAATTCAAAGATTTCGTATCTCTGAAGAAACACACGTCAGAACATTTCCAGAATTATGTATGTGATATTTGCGGGGAAGGTTTTATAACTGAGTCTGCAATGATCGCTCATACGAAAATACCTCATGAAAACAAATATAACTGCAGTCGATGCATAGCCACGTTTTCTTCGTTGGACGAGAGAAATCTGCACGTAAAGACGCAGCACACTTCAATGCCTTACATGTGTATGTACTGTAAAGAGAAGCCACGATTTGCTAATTGGGAAGTTCGCAAGAAGCATATGATGGCCGTCCATAATTATAAAACTGGAGCGGACAAATATGAGTGTACGACGTGTCAAAAGTCTTTCAAGACTAGATCCGGGAAATACAACCATATGGCGAGAGTGCATAGAGTTAAAAAGGATTCGGAACTCAACTACCCTTGTCCGAGTTGCCCAAAAGCTTTTACAACTAAGCTGTTCCTGGACAAACATGTAGCCAAGAAACACTTTGATGTGTAA
- Protein Sequence
- MYIAKRNAQTVLQYATAYPFRLPESSIVCVYCCENFDDGPLFRMHMDSNHKDVNVRVAYAHLHEGYIKADCTDIRCRLCCQTFDNVDEIAHHLNQKHDQKINMEYSVGIQPFRMEKDKLSCAICCTKCSNIRSLSRHIQEHFFQCTCELCGKSFATSASLQKHLEFACPFVPKQRRCRKYDHVMPPLAMARRNAEFLITHATVYPFRLPDALIMCVYCCEEYHEPSTFRQHMRDEHDAFKAKNAFAHCNHEGYLKVDCSEIKCRICSESFDKIETVARHLAETHDVKYNFDAHLGVHPYRFVQEKILCGVCDVNFPCMRQLSRHMAVHFQNFTCDYCGKSYTTNSSLLQHLRFVHTTEGRICRKCKKTFKTLEEKKEHVAATSKCWLYACGECNLRFLTWYLKEEHLVQVHGKSKKTYPCSECEKTFGSRGQYRTHFNTTHSDVKYVCSICEVQPHIMAKENAEIVLQYSTVYPFMVRAQALLCVYCEEQYEDPIQYRRHIDVIHKKFSIAAAFAHIGNRRDFLKVDCTNLRCRLCSEPFSKVNEVAEHLAKEHNLKLKLDYEIGLQIYKLEKGNWLRGKALLCVYCCEGYEDPTHYRRHLDGNHKQFTVSTAFAHIGSGKDYLKVDCTNLKCRLCGEPFANLDDVAGHLLKEHDSKEMRKLRLEYDIGTTLEIHGRRNSGNDPKKKIVLVYQTPQRRNAELILTYSTAYPFKTRFSQILCSYCHEEYSTLSDLRLHMKTEHRNSDFKNVFYRAKDNLVKIDITNLKCNICGQDMDDIDELMSHLYNVHNKPVKFNARYGVLPYKQAGNDVWMCIYCNKTFNEFIIFKRHIVTHFMNYSCDKCGTTFVSDHALRDHHRQVKCFRTAYKARNGRVLKPRTNAEIILQCSTASPFRTWKSNFNCVFCRVQSNDPSGLRQHVGTVHANYDVKAAFYKKLGKDFLSIDITDLQCKLCFMPITTFVSLIYHLKNDHQQPINDDAQLGVLPFRLNDGSIWKCTMCPNEFKDFVSLKKHTSEHFQNYVCDICGEGFITESAMIAHTKIPHENKYNCSRCIATFSSLDERNLHVKTQHTSMPYMCMYCKEKPRFANWEVRKKHMMAVHNYKTGADKYECTTCQKSFKTRSGKYNHMARVHRVKKDSELNYPCPSCPKAFTTKLFLDKHVAKKHFDV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -