Emi009548.1
Basic Information
- Insect
- Euclidia mi
- Gene Symbol
- -
- Assembly
- GCA_944738845.2
- Location
- CALYKX020000084.1:3005181-3008067[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.031 8.8 9.2 0.1 5 23 364 382 363 382 0.96 2 12 0.074 21 8.0 0.2 3 23 390 410 388 410 0.89 3 12 1.7 4.7e+02 3.7 0.3 3 23 419 439 417 439 0.89 4 12 5.6e-07 0.00016 24.1 0.7 2 23 445 466 445 466 0.98 5 12 0.0037 1 12.1 3.4 1 23 472 494 472 494 0.98 6 12 0.00012 0.034 16.7 0.5 1 20 498 517 498 519 0.93 7 12 0.00018 0.051 16.2 0.2 1 23 552 575 552 575 0.95 8 12 0.0022 0.62 12.8 0.2 3 23 584 604 583 604 0.99 9 12 2.6e-05 0.0072 18.9 0.4 1 23 615 637 615 637 0.98 10 12 6.9e-05 0.019 17.5 4.5 1 23 643 665 643 665 0.98 11 12 0.0026 0.71 12.6 0.3 3 23 673 693 671 693 0.98 12 12 5.5e-06 0.0015 21.0 0.7 1 23 699 722 699 722 0.96
Sequence Information
- Coding Sequence
- ATGGGTACGTGGTCCGAACTTTGTCGGTGCTGTTTGTCTGCCAATTGCGAAGTGTCATTGTTAGATACAGAACAAAATGTTAATGAAAAGTTTCTCGAGGTCACAACTATCGAGGTCAGAGCTGATGATGGTCTACCACAGAAGCTGTGTAATGAGTGTTACAATATTATGATATCTGCGCACCAGTTCCGTAAACAGTGTATCAAAATGGATAGTGAACTGAAATTACAACTAATGGCTCTGCTTGAGCAAGAACTACAAGATAATAGCAAGATTGATGAGACGCTTACAGATTTAACCCAAGAAGATGATTGTGACGATGATGACATCGCGAATGATCCACTGAAGCAATTAGCAGCTATAATAAAAGAGGAACCAACAGATAGCGATGATGATTACTATTATGTTTTTGTAATTGATGATACCAAAGATAAAAGTGAAGAACTTAAAGCTGAACATAAAATTACTGATGCTAAAATTAAAGTTGAAGATGAGCCTACTGATAAAATTAAAGTTGAAGATAAACCTACTGAGGAAGTTTTTGAACCTGTGGAAACACAAACTACCACACAGAGTCAATTTGAAGATTCAATTGAATCTTTCTTAATGTCAAATACCAAAGTGCCAGCAAATGTGCCAGCTGCTATTCTAGAATATGAAGAAGAAAGCCAAGAGAATGATGATTTGGATAATGCTATGAACATTGATGAGACACAAGATAGTACATCCCAGGATCAAACATTGGCACAAATTGTGGATTCACAGGATACTCAGATCATTGAGACTATTTCAGCAGAAGCTATCAAAGACTTGCCTAATAAGAACTTTATAAAAATATTGACAACTACTGATTCTAACGGTACAATCCTGCTGAAAGGCAATGATAGGATTCAGTACCTAACTGACTCGCAGTTGGTCACTAATGACAATGAGGATGGTGATGGAATGTCTCAGGAAGTAATATTTTGTGAAGGTGATGACTCTTCTCAGTTCCAAATTCTGAAGTATGATGGGTCAGAACTTGTCATTGAATATGCTGATGAAGGCCATATTGCAGTTCTTCAGCAAGAAGACGGTACATTCTTGTGTGATTGTGGTGAGCAGTTTGAAGATTTGGCTGATTATGAGAAGCATCAATACAAGCATAACCCAGCAGGAGAGCATTTGTGTAACCTTTGTGGTAAAGGCTTTGAATCTGCAGAGATTCTAACTGGTCATACGTTACTACATAGCAGCTCTGGTCTATTGATTAACTGTCCATTCTGTAACCAACTAATAAGACGCAATGCCTTAACACAGCATATCAAGTATGGTCACAATAATGTAAAACCAAGATGCAATATTTGTTTGAAGACATTTGCTAATCCAAACAATTTGAAGCGGCATATGATGATCCATAGTGGTATCAGAGAGTTTGAATGTGATATTTGCTTGAAACGGTTCCACCAGAAAATAACAATGCAAACACATAGACTAACGCATATGAATCCGTATGCTTGCAATCAATGTGAGAAAACATTCCAGAATAAGAGTGCCTTAACATCACACAAGGAATCTAATGAATGTACAAAGTCAAAAGTGATTAAAGTAAAGGAAGAATTGATGAAAACGGTGAAGCAAGAGATTACTACGAATCTTGGGAAGCTTTTAGGTTATGCATGTTCATTGTGCAAGAAAATGTTCTCAGTAGAGTCGGCTTTGGAACAACATGTTGAAAGCACACATATTGTAGATCCAACAGATCTGCTATGCTCAGAGTGTGGTGAGGTGTTACAGAATAAACGTGACATGCAGACACACATTCTAACACATAAAAATGTCAAAGCAAAGAATGCAAAGAGGTTTGAATGCAGTATTTGTGGTAAAGGGTGTTCAAGCCAAGCTATGTTGTTGATGCATGAGCGTGTTCATACTAATGAAAGGCCATTCCCTTGCCAACTCTGCTCACTTAGATTTAAGACTAAAACTCATCTAAGAACACATCAGCTAACCCACACAAGGGAGAAGAAATTTGGTTGCTCAGTTTGCATGAAATTCTTTGCGCTAAAAGGTAATTTAGTTGTACATTTGCGTACACATACTGGTGAGAGACCATATGTATGTTCAATATGTGGTGAAGCATTCATAGACTCTAAATATCTTAAGAAGCATAAACTAAAGAAGCATGCTATAGACAATGTTCCTTGGAACCAATATTAG
- Protein Sequence
- MGTWSELCRCCLSANCEVSLLDTEQNVNEKFLEVTTIEVRADDGLPQKLCNECYNIMISAHQFRKQCIKMDSELKLQLMALLEQELQDNSKIDETLTDLTQEDDCDDDDIANDPLKQLAAIIKEEPTDSDDDYYYVFVIDDTKDKSEELKAEHKITDAKIKVEDEPTDKIKVEDKPTEEVFEPVETQTTTQSQFEDSIESFLMSNTKVPANVPAAILEYEEESQENDDLDNAMNIDETQDSTSQDQTLAQIVDSQDTQIIETISAEAIKDLPNKNFIKILTTTDSNGTILLKGNDRIQYLTDSQLVTNDNEDGDGMSQEVIFCEGDDSSQFQILKYDGSELVIEYADEGHIAVLQQEDGTFLCDCGEQFEDLADYEKHQYKHNPAGEHLCNLCGKGFESAEILTGHTLLHSSSGLLINCPFCNQLIRRNALTQHIKYGHNNVKPRCNICLKTFANPNNLKRHMMIHSGIREFECDICLKRFHQKITMQTHRLTHMNPYACNQCEKTFQNKSALTSHKESNECTKSKVIKVKEELMKTVKQEITTNLGKLLGYACSLCKKMFSVESALEQHVESTHIVDPTDLLCSECGEVLQNKRDMQTHILTHKNVKAKNAKRFECSICGKGCSSQAMLLMHERVHTNERPFPCQLCSLRFKTKTHLRTHQLTHTREKKFGCSVCMKFFALKGNLVVHLRTHTGERPYVCSICGEAFIDSKYLKKHKLKKHAIDNVPWNQY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01198026;
- 90% Identity
- -
- 80% Identity
- -