Emi009987.1
Basic Information
- Insect
- Euclidia mi
- Gene Symbol
- -
- Assembly
- GCA_944738845.2
- Location
- CALYKX020000088.1:1579653-1624340[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 3.4 9.4e+02 2.8 1.3 3 11 58 66 57 72 0.81 2 12 0.24 68 6.4 0.1 1 23 497 519 497 519 0.96 3 12 0.0021 0.59 12.9 0.6 3 23 534 554 532 554 0.94 4 12 0.0011 0.32 13.7 2.6 1 23 560 582 560 582 0.98 5 12 2.6e-05 0.0072 18.9 2.9 1 23 589 611 589 611 0.99 6 12 5.2e-06 0.0015 21.1 0.4 1 23 617 639 617 639 0.93 7 12 2.2e-08 6e-06 28.6 0.2 1 23 645 667 645 667 0.98 8 12 3.2e-06 0.0009 21.7 1.3 1 23 673 696 673 696 0.96 9 12 0.00012 0.033 16.8 3.4 1 23 702 725 702 725 0.96 10 12 1.7e-05 0.0046 19.5 0.9 2 23 732 753 731 753 0.97 11 12 1e-05 0.0028 20.2 1.0 1 23 759 781 759 781 0.97 12 12 0.015 4.2 10.2 0.0 1 22 787 808 787 808 0.96
Sequence Information
- Coding Sequence
- ATGAATCAGTACTGCCTGATATGTAACAATAGAGCCGGCTTATCATTAAGAAATGCGACCAGCCTATTTGGAGAGCATAACACATTACAATCAGGCAAGAAACTATCGGAGGTGGTGAGCAATATTCTGGATAAGCCATTACAAGAGAGCAAAGTACACACCAGCGTGCTATGTAAGAAGTGCCACAAATCCTGCTCAGAGTATGATTTAATACAATCTCGGTTAAAAAAGCTGAAAGATGATCTCGTATCCCAATTCAAACTGTCGCTGGCTAGTCATAAACTGGACTATGACAACTATGGGGGAATTGCTGAAAAGACCAGTACCCCATCTTCTGCGAAGCCACTACTTCTTGGCAAGAAACTGGTGTTGCCGGCGTCTAAACTACAGCCTATCACACCGGAGTTGCTCCTCAAAGTGGGGAAACTACCCACATTCTCGAAAAATAGCGTGATGTTACCACAAATTAAGCCAACAACAGCCTCAACTCTCAACCTAAAAGTGACAGTAGGAAGCTCAGTCCTAACGCAAACCATCATAACGACCACAAACACTAAACCAGCTGAAAAACAAACAGCAACCATAGACCCAAGCATATTAACATCTTTAACAAACTCTTTCAAAGATGACATTGACAGCATAGTGACGTCTAACAGTCATATGACACCGAAGACTTCCATTTTGAATTTTAACGTGAACAGTTTACCGAAGAATTTCCTGTCTGAAGCTATGAGTAAGGTTGATGAGGATGATGATAAAAGTGATGATGGTGATAAAGGGAATGATGATGAACAGTCTATGGAGATTGATGAAGATTGTTCACTATCCCTAGTACCTGTGACGACAGCTGATAGTAATAATTTAGTTCTAGAAGTGGAAGGGATTAAGACCAACGAAAAGTCAGAAGTAAGCGAATACCTGAACGTGGACGAACTCCCAACGCTGGACCCCACGAACGAAGAGCACAAATACATACTGGGAAAACTGCAGATACTCAACGAAGGGGACGAGGAGATCGATGAGGACGAGGATGGACATACAATAGTAGTAAACAGCGATAACGGTTCAATACTACGAATGGTGTCGGGACAGAAGTTTATATACGAGGGCGGCGAAATATCTCTAGTTATGGCCGAAGATGAGCAGCAACAGGACGATAATAACGACCTCAATGATGAACAGGATTCGAACGACGAGACTGCAATAGAGTTACAAATGGCAGGCGATGAGGAAACTGCTAAAGCTATATTAGCTGCAGCTCAGGAGCAAGGCGGAGCCTTTATCAAAGTGGAGTCTGGTGAGATGTTCCGAGTGCAGACGGTAGATAGAAGAGAAGACGCCTTACCCCCACTTGTAGCGAAGGAGGGTGATTCCTTCAAGTGCCTGCTTTGTACTGCCAATGTTAAAAATGAGGAGAAGTGGCCCAGTGTGACTGGAGACGCAGAATCAATGATGCGTCATCTGAAACGTTTCCACGACGCGAGGATATACATCTGTCAGTTCTGTGGGACTATCATGAGGAAACGGATCGACTATACCGCGCATATTGCCGAGCACGCCTCAAAACTAAAATCCAGCGGTTCCCGAGCCTCCCATCTATGCAACTCCTGTGGCAAGACATTCGGCAGTCGCGCCTTACTACTAGAACACGCCAACTTGCACGCGGGACTTCGCCCTTATGCTTGTGAACTTTGCCAAAAGACATTCGCATCGAAATATACCCACCAAGCACATTTGAAGACACATGCGAATCGTCCCCGCCCGTACAAATGTACCCAGTGCGACAAATCGTTCCTGACGCAACAGAATTTAACACAGCACGAGAAAACGCACTCTGGTGTTAAGGACTTCGTCTGTAATATATGCAGCAAAGCATTCAGTACCCAGCACAACTTAGAAGTGCACGGTGTAGTACATTCTGGCAACAAGGCGTTTGTATGCACCGTGTGCGGGAAGGCGTTCGCTAGGAGGGCAGAGCTTAGAGACCATATGAGGACACATACTGGCGAGCGCCCATTCCCGTGCGACATCTGCGGCGCTCGCTTCACGCAGCGCTCGAACCTGCACTCGCACCGCCGCGCCACGCACCTCGACGACAAGCGCTACCACTGCAGTCAGTGTCCCAAGCGGTTCAAGCGGAGACGATTACTGGAGTACCACATAAAGGCGTCACACACCGGCGAACGTCCTCTAAAATGCAAAGTGTGTCCCGCGTCATTCGTGTACCCCGAGCATTACAAGAAACATCTGCGTATACACAGCGGGGAACAGCCTTATGTATGCGAGATCTGCGGCAAGTCGTTCAATTCCCGGGACAACCGCAACACTCATCGGTTCATACACAGCGACAAGAAACCTTACGAGTGTGTCGCGTGCGGCGCCGGCTTCATGCGCAAACAACTGCTCTATGCGCACATGAACACTAGTGGCGTGACACTTCCAATAGAACACGAGAGAACGGACTCGCAGTCTAGTGATAAATTTGATACGATATTTGAGACTAGCGAATTGGATAACAGCATCAAAAGTGTTGATAACTTAGGCGAGAGGACACAAAGTGCCATCCTAGAAGCAGTCAGCGCCGATCAGTTGAGTGAACAGACTGAGATCGTAGCCAACGATGAAAACGGCGGTGTAGTACGATTGATACAGATCAAGCTACCGGACGGTAATAATGGATGGGTGGCGCTTAACCGCTGA
- Protein Sequence
- MNQYCLICNNRAGLSLRNATSLFGEHNTLQSGKKLSEVVSNILDKPLQESKVHTSVLCKKCHKSCSEYDLIQSRLKKLKDDLVSQFKLSLASHKLDYDNYGGIAEKTSTPSSAKPLLLGKKLVLPASKLQPITPELLLKVGKLPTFSKNSVMLPQIKPTTASTLNLKVTVGSSVLTQTIITTTNTKPAEKQTATIDPSILTSLTNSFKDDIDSIVTSNSHMTPKTSILNFNVNSLPKNFLSEAMSKVDEDDDKSDDGDKGNDDEQSMEIDEDCSLSLVPVTTADSNNLVLEVEGIKTNEKSEVSEYLNVDELPTLDPTNEEHKYILGKLQILNEGDEEIDEDEDGHTIVVNSDNGSILRMVSGQKFIYEGGEISLVMAEDEQQQDDNNDLNDEQDSNDETAIELQMAGDEETAKAILAAAQEQGGAFIKVESGEMFRVQTVDRREDALPPLVAKEGDSFKCLLCTANVKNEEKWPSVTGDAESMMRHLKRFHDARIYICQFCGTIMRKRIDYTAHIAEHASKLKSSGSRASHLCNSCGKTFGSRALLLEHANLHAGLRPYACELCQKTFASKYTHQAHLKTHANRPRPYKCTQCDKSFLTQQNLTQHEKTHSGVKDFVCNICSKAFSTQHNLEVHGVVHSGNKAFVCTVCGKAFARRAELRDHMRTHTGERPFPCDICGARFTQRSNLHSHRRATHLDDKRYHCSQCPKRFKRRRLLEYHIKASHTGERPLKCKVCPASFVYPEHYKKHLRIHSGEQPYVCEICGKSFNSRDNRNTHRFIHSDKKPYECVACGAGFMRKQLLYAHMNTSGVTLPIEHERTDSQSSDKFDTIFETSELDNSIKSVDNLGERTQSAILEAVSADQLSEQTEIVANDENGGVVRLIQIKLPDGNNGWVALNR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -