Emi075910.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Euclidia mi
Gene Symbol
-
Assembly
GCA_944738845.2
Location
CALYKX020001070.1:409992-416791[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 2.1e-06 0.00059 22.3 2.2 1 23 321 343 321 343 0.98
2 12 0.00029 0.081 15.6 2.5 1 23 349 371 349 371 0.97
3 12 0.00015 0.042 16.5 5.4 1 23 377 399 377 399 0.99
4 12 0.00013 0.037 16.6 4.0 1 23 430 452 430 452 0.99
5 12 1.7e-07 4.9e-05 25.7 0.8 1 23 458 480 458 480 0.99
6 12 2.6e-05 0.0071 18.9 0.4 1 20 487 506 487 509 0.94
7 12 0.00016 0.044 16.4 3.4 1 23 515 537 515 537 0.99
8 12 2.2e-05 0.0061 19.1 1.2 1 23 543 565 543 565 0.99
9 12 0.016 4.5 10.1 6.3 1 23 574 596 574 596 0.98
10 12 0.00047 0.13 14.9 1.5 1 23 602 624 602 624 0.99
11 12 4.8e-05 0.013 18.0 4.9 1 23 630 652 630 652 0.99
12 12 6.9e-08 1.9e-05 27.0 1.4 1 23 658 680 658 680 0.99

Sequence Information

Coding Sequence
ATGAAAAAAACTGGACATTGGGGCCACAATGGAACTAAACAAGACTCGGTGGCAGTGAGTGTTGACCAAGAGACAAGAAGCATATGTAGAGGTTGTCTGTCGACTGATTGTAGAATGTTTAATGCAATGACTTTTGCAGACTCATTCAAAGATTTGACCGGCATAACTATCTCACCTACAGATGGGTTACCACAGTGGCTGTGCTATGTATGTACAGCGTTGTTACACGAATGTGTAAAATTCAGAAATAAAATAATGATGTCACACTACAGGTTGTGTCAGTATGTGCTGGAGAGTGTTCCCCTTGAAGAGCAAATCGACGACACGGATGAACATGAGACTAATATGCTCAGTGAAACAGAAGAGAATGTACAAGTTAAAGACGAGCGCGTGTTGTCTGATCATGAAGATAACATTGATGAAGAAGAGCACAGAGAAGTAATTCCACCAAGGCAAATTGTAAGCGACGCTGCATCGATTAGTAATGCAGTTAAAGAAGAAGAAGGATATACAACGACGGAATGTACAGAGACGTCGAACTACGAGGGAATAAAACAGACAGAGGCGGCGCGTGTCGAGTCGCACGTTGTCACACAAGCGCCGCGTCACTCACTGAAAGCGCGGCTGCGCTTTGACGACGACATCTGTAGTGAAATTGAGAAACCTACCACACACAACAACGACCTCGAAGAAACCACTGCAAACGACATTCAAGATAGTGATGAAGAAAGAGATGAATCATGTAAATATAATGAGATACTCGCGAAACGTGAACAAGCTGATGACAGTGACGACGATATTAATAGTAGTACATGTACTAATGCACAATCATATGATAAAGAGAAACAACATCCTGTACATAATACTTCAACGCGACACACCGATGACGCCGAAGAGGAGGTCAAACAAAATATACATAGAGACGACAGTGTTAGTAGTTCACGTAGTAATGTACaatcatatatatgtgatacgtgcaacaagtgctttaccgacaagaatctcttaataacacacattcgcgaacattcagctgagaaatcatttaaatgtgatgtgtgctatgaacgtttccctaatgagtctaccttaactaaacattcgtgtgtacatactgccgcaaagctgttccagtgtgatgtttgtaagaaatgttatcgctataaacgtaatataattcaacatctacgtaaacactctagtgaaatgttttatagtggtgacgtatcagacaaaaggtcaaagcgtgacacacgcttaactgctgtgcacactggtggcaagccgtacagatgtgatgtttgtatgaaatgttttgctaaaaattattatttaaagacccaccttcgagtacacactggcgacaggatatacgagtgtgatatatgtacaaaacgtttcataagaaaatatagtttagaaagtcacattcgtattcatttcgcctatttgaggctatacgaatgtgatatttgttcacaaagtttttctcagaaacgttatttagaacgtcatgttcctgtgcacacagttgaaaaaccatacaaatgtgatatttgtatgaaacgatttaggcttaaaggttctttacataatcacatgcgattacacaccggtgacaggccatacaagtgtgatatttgtgctcagggttacaaaagaaaagcgcatttagatcgtcacattcttactcacagcggtgtgaagcaaatgaggcattacaaatgtcatgcttgtacacaaagtttctataagaaacagaagttagaacaacatcttcatatacacatcgatgagtggccatacaagtgtgatgtttgtttaaaatgttttaaaataagaggtgacttagatgaacatactcgtatacacactgatgaaaggccttataaatgtgatttttgtacaaaagatttcactcataaaaatctgttaaataaacatgctcgtagtcacaccggtgagcggccatacaaatgtgatatttgtacacaaggatttactcgaaaaagtaatttaaaacgtcatgctcgtgtacacaccggtgaaaaaccatacaaatgtgatgtttgttaa
Protein Sequence
MKKTGHWGHNGTKQDSVAVSVDQETRSICRGCLSTDCRMFNAMTFADSFKDLTGITISPTDGLPQWLCYVCTALLHECVKFRNKIMMSHYRLCQYVLESVPLEEQIDDTDEHETNMLSETEENVQVKDERVLSDHEDNIDEEEHREVIPPRQIVSDAASISNAVKEEEGYTTTECTETSNYEGIKQTEAARVESHVVTQAPRHSLKARLRFDDDICSEIEKPTTHNNDLEETTANDIQDSDEERDESCKYNEILAKREQADDSDDDINSSTCTNAQSYDKEKQHPVHNTSTRHTDDAEEEVKQNIHRDDSVSSSRSNVQSYICDTCNKCFTDKNLLITHIREHSAEKSFKCDVCYERFPNESTLTKHSCVHTAAKLFQCDVCKKCYRYKRNIIQHLRKHSSEMFYSGDVSDKRSKRDTRLTAVHTGGKPYRCDVCMKCFAKNYYLKTHLRVHTGDRIYECDICTKRFIRKYSLESHIRIHFAYLRLYECDICSQSFSQKRYLERHVPVHTVEKPYKCDICMKRFRLKGSLHNHMRLHTGDRPYKCDICAQGYKRKAHLDRHILTHSGVKQMRHYKCHACTQSFYKKQKLEQHLHIHIDEWPYKCDVCLKCFKIRGDLDEHTRIHTDERPYKCDFCTKDFTHKNLLNKHARSHTGERPYKCDICTQGFTRKSNLKRHARVHTGEKPYKCDVC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-