Emi075182.1
Basic Information
- Insect
- Euclidia mi
- Gene Symbol
- -
- Assembly
- GCA_944738845.2
- Location
- CALYKX020001049.1:1095833-1124472[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00091 0.25 14.0 3.6 1 23 230 253 230 253 0.98 2 12 0.0071 2 11.2 0.7 1 23 262 284 262 284 0.95 3 12 4.5e-05 0.013 18.1 1.5 2 23 291 312 290 312 0.97 4 12 1.3e-05 0.0037 19.8 1.0 1 23 318 340 318 340 0.97 5 12 6.2e-05 0.017 17.7 0.3 1 23 349 371 349 371 0.95 6 12 0.0012 0.34 13.6 0.1 2 23 378 399 377 399 0.94 7 12 0.00056 0.16 14.7 7.5 1 23 405 427 405 427 0.98 8 12 3e-09 8.4e-07 31.3 1.0 1 23 433 455 433 455 0.99 9 12 9.1e-06 0.0025 20.3 1.6 1 23 461 483 461 483 0.98 10 12 0.00022 0.062 15.9 0.4 1 23 489 510 489 510 0.97 11 12 0.006 1.7 11.4 1.3 1 23 516 538 516 538 0.94 12 12 8.9e-06 0.0025 20.3 2.4 1 23 544 567 544 567 0.98
Sequence Information
- Coding Sequence
- ATGGAGCCAGATTCTGTTATGGAAAATGTGCCGGAAAATGAAAATATTGCACCAAAGGAAGAAGCAAGTTACATAGAAATAGAAATACCGTATACATTATATCAATTTCTTAGCACAGAAAACTGCGATGTACAAAATATATGCCGAATATGTTTAACTACAAACAATGATGTGTTGTATCCCTTAGTGCCTGTCAACGAAAACAATTTCTTAGCTGATATTTTTGCGACATTGTCCAATGTTCGAATGGCTGCTGATGATGGTTTACCTACAAGTATTTGTGAGCTATGCCAGTCCCTTGTCCTGCAGTACTATGAATTCAAGCTAAAGTGTGAAAAGTCAGACTGTATGCTCAGATCTATATTAAAAGGAGAGTTTGTTGTAAAGGAAGAAGTACCAGACTGCAGTATACCAGTAAAAGAAGAAGTGTCAACCGTAGATAATAATGTAGAGAATAATAATACTACTGAAGTTAAAACAGAGCAAGAATTAACGGAAGATGTGCAATATCTAGAAGAATTTGTTAATGGCAGTGATGCAGATAATGATAAACTTCTCATTGCACAAAAGGACAAACAAACACATGGCAAAAGAAAAAAGAGAAAACGTGCAAAATCGAATGCTTCGAAATGGAATCGCAAGGAGAATGCTTCTGAAAAGGAGAAATCGGAAACAAAACCAAAGACATACACTTGCAGTCATTGTTCTAAGGTGTTCTTAAGAGCGAAAACATTACGCATGCATGTTAGGAGCAAGCATGGCATTGTCATAGAGAAGAGGCCGCATCAGTGTGGCCAATGCGCGGAATCATTTGACTCAGAACACGATCTCACTGTCCATTCAGCCATACATAATAAAGGAACTTGTTGGAAATGCAATCAGTGTTCGAAAGATTTTAATTCTAAACCAGCATTCCGTCGTCACATCCAGCGGCACATGCAGTTCAAGCGTCATACGTGCGCGTCGTGCGGCAAATCCTTCTCGGAGCTGTACGCGCTGCGGCGACACGCGCGCGTGCACACCGGCGAGCGCCAGGAGAAGAAACACGCGTGTCACGTCTGCGACAAGAGGTACAGCGACGCGGGGCTGCTGGCGGCGCACGTGGCGCGTCACGCGGGGCTGCGGCCGTGCGAGTGCGGCGCGTGCGGCAAGCGCTTCGCCTCGCCGCGCCTGCTCGCCTCGCACGCGCTCGTGCACACCGACCACAAGCCGTACGCCTGCCAATACTGCGACAAGCGTTTCCGTCACGAGTCGACGCGCAACACGCACCACCGCACGCACACGGGCGAGAAGCCCTACGTGTGCTCGACGTGCGGCAAGAGCTTCATACAGAACTCCAACCTCACGCTGCACATGCGCACGCACACAGGTGAACGTCCATATTCGTGCAAGATGTGCGACCGCAAGTTCACTTCAGGTTCTTCGCTCAAGAGTCACGAACGCATCCATACTGGCGAGAGACCTTATAGCTGTAATGTTTGTGGGAAAAGATTCGCGCGCATGAACTTAGGCGCACATATGCGCCAGCACACCGGCGAGCGACCGTTCGCGTGCACCGCCTGCCCGAAGAAGTTCGTCAACGCGTCGAGACTCCGAGACCACTGCCGAATACACACTGGTGAGAAACCATACGAGTGCGCATCCTGCACCTTTACTTTTGCTACAAAATCTCACCTTGTAAAGCATATGAAAACCATCCACAACCCTCCAAAGAAGAAAACGAGCAAACGAAATGTAATTCTACTGCAGCAAATTCCTTGCGATCCTCCCGACATTGTAGATAATATTGTTCATGAAGAGAATCAAGAAATTCCCAACGAAAACACAGCGATTATTGAACAAGTGAATGATGTAGAAAATAATATAGCTTTAGTACAAGAAGTTCCATTGGAAGTAACCGGAGAATTAATACTACAAGATGAGAATAATATGAAAGCAGATCTTTTGATTGTGGGTAATTCAGAGAACAATTACCAAATAAGTAATGACGGTATTTGCCTGAATGCTGACAACATGAATATAATAAATGGTGAAAATTATGGCAGTGATGTGAATTTAGTGACGGTGAACGAAGGAGGTGTTAGCATATCGGCGTCGACGCTAGAAGGAACCACAGTGAAACTGTACCAGTTAGACCAAAGTTTAGTACAAATACATAGTTCTGGCGGTCAAGTCACTATTAGTAAAATTACCAGCAAAATGACCGCCAACTTTTAA
- Protein Sequence
- MEPDSVMENVPENENIAPKEEASYIEIEIPYTLYQFLSTENCDVQNICRICLTTNNDVLYPLVPVNENNFLADIFATLSNVRMAADDGLPTSICELCQSLVLQYYEFKLKCEKSDCMLRSILKGEFVVKEEVPDCSIPVKEEVSTVDNNVENNNTTEVKTEQELTEDVQYLEEFVNGSDADNDKLLIAQKDKQTHGKRKKRKRAKSNASKWNRKENASEKEKSETKPKTYTCSHCSKVFLRAKTLRMHVRSKHGIVIEKRPHQCGQCAESFDSEHDLTVHSAIHNKGTCWKCNQCSKDFNSKPAFRRHIQRHMQFKRHTCASCGKSFSELYALRRHARVHTGERQEKKHACHVCDKRYSDAGLLAAHVARHAGLRPCECGACGKRFASPRLLASHALVHTDHKPYACQYCDKRFRHESTRNTHHRTHTGEKPYVCSTCGKSFIQNSNLTLHMRTHTGERPYSCKMCDRKFTSGSSLKSHERIHTGERPYSCNVCGKRFARMNLGAHMRQHTGERPFACTACPKKFVNASRLRDHCRIHTGEKPYECASCTFTFATKSHLVKHMKTIHNPPKKKTSKRNVILLQQIPCDPPDIVDNIVHEENQEIPNENTAIIEQVNDVENNIALVQEVPLEVTGELILQDENNMKADLLIVGNSENNYQISNDGICLNADNMNIINGENYGSDVNLVTVNEGGVSISASTLEGTTVKLYQLDQSLVQIHSSGGQVTISKITSKMTANF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -