Emi076939.1
Basic Information
- Insect
- Euclidia mi
- Gene Symbol
- -
- Assembly
- GCA_944738845.2
- Location
- CALYKX020001097.1:2349999-2352798[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.3e-09 1.1e-06 30.5 0.1 1 39 16 55 16 57 0.94 2 2 3.4 2.7e+03 0.3 0.0 23 39 639 655 639 657 0.87
Sequence Information
- Coding Sequence
- ATGCCACGTAAATACTCCCGAACCTCTTCGCGGGCCACTTCGTATACTAAAGAAGCGCTGCAGTTAGCCATACAAAAAATAAACAATAAAGAGCTCACCTATGCAGCCGCATCAAAATTGTATGGCATACCTACATCAACACTTAGTGATAGAGTCCTAAAGAAAACAGCTATAccagcaaacgaggctggatggaaactaatatttttttatgattacatgtcaaaagtaattatacctaatttgggtgaagacagacccgtattattactatatgacggacatgtcagccatgtcgatgacaaagtggtagctttagcagtagaaaacaatatcaccatattgaagtttcctgcacacacatcacatctattgcaaccgctagacttggctgtgttcaaatcatttaaaacaatttgggataaaaaccttgtaaaatggcaacgacagaatgttggaatcaaattaagaaaacaaagttttgctcaaatgtttgccaaagcgtggcaggaaaccaaaccagaggtcatacgaaatggtttcaaaaaaggtggcatttacccttttaaTCCTGCGGTTATACCAAAAGACAAATATGATCCAGCAGCTTATGCGCGATGGCAAAAACACATGGCTAAAATGACTTTTGAACAACCGAAAACTCTAACACTGATATGTGTAGATAAAATTAATAAGATCATGTCGAATATCAGCTCTACTTCTATCCCAAATAATAATATTGCTTACTCTGACATGTCGGACTCACCTACTTTAAAACATAGAGACAGCTCGCTACAACCACAGACGACTTTCGAACAATTGCTTCTAGAAAAAGTTTCGCAACATCCTGAAAACTCTAAGAACAATGTAGCTGTTAGGTTAAAACGAGTCGCGAAAGGTGCAGAAGTGATTACAAAATCTTTTCTAGAAAAGCAGCAAGAGATAGAATTAACAATGGAAAAAGAAATACAGAAGACAACAAAACGGAAACAAAAAACAGCACTTCAATCTAAAAATGATGCATTTGATTCTGTACCAGGACCATCTAAAATTCAAGATAAAAACTTAAAAACAAAAGAAACCGTAACGAATGTATCAGTATTGACTGAAAATAACAACACTGACGTGTATGTTTCTAAAAAAGGAAAGGGGATAGGTAAAAAAACTCGAACTGGCAAGGAAAATGATTTGAAAGTGGACAAGCATGCTAAACAAAAGGGGAAAAAAGCAATACATAAATTAGATAATAAATCTGATCAAAGAACGTCTACAAAGACAGCTCTGAAAAAGCGAAAAAGATCAAATAGCAGTGTTACGACAATTGAAAGTATTCAGATGAGCGTACATAGTGATTCTGACTTATTAGATTGTTTGAGTGATATATTATCTGACTGTGATATATGGACTGACTTTAATTATTATGACGGAAACAAGACTGACTTAGAATTAGCAGCTAGAGGACAACAAATTGAACAAATAGTTAAAGGAATACATGACGTTGATAATAATCAAGAGGGAAAAGCAAGCCAAAGGGACGACGAATTGTGTGAAGAAAAATGTGAGATAGAAGAAATTCTAGAAATTCGGACCAAAGATACAAACTTTCAGGTAAATGATAATAATAAAGTAACTATCTTATCGTCTGTAAAAATCACACCAGAGAACCAAGTTTTCTACAAAATTGTACCCGAAATATTACAACTAAAGCCAATTGATAAAGATACAGATCTATTTGCAAACCAAAAGCGAAAACTGTCACATAGTACAAGCGCATCTAATATACCAAAGAAAAAAACAAAGAAAGTTAATTGTCCTACAAAGACAATGACAAAAGAGCAAAAGGATTGCAGTGAAAACTTAAATATCAAAATTGATAAAGATGATGATATTAAAACAAAATATTATAGTGATGATGCGAAGCCATACAATATTGGGGATACAGTTCTAGTTAGATATTTCAAACGAACTTGGATATATTACGTCGGTGTCATTGAAAATAATACTATGAGTTCAAACCCAAATATGTATAACATAACATTCTTTAAAACGATTGGCAAGAAAAATAACCTGAAATTTGTTATTCCTAAGCGTAAAGATCAAGATTACGTACCTGATTCAAATATAGTTAAGGTGATAGAACTACTGCAGATAAATGAGGATCCCGTGGAGTACACACTTATGAATGACGATGATGAGAATTTCTTTTAA
- Protein Sequence
- MPRKYSRTSSRATSYTKEALQLAIQKINNKELTYAAASKLYGIPTSTLSDRVLKKTAIPANEAGWKLIFFYDYMSKVIIPNLGEDRPVLLLYDGHVSHVDDKVVALAVENNITILKFPAHTSHLLQPLDLAVFKSFKTIWDKNLVKWQRQNVGIKLRKQSFAQMFAKAWQETKPEVIRNGFKKGGIYPFNPAVIPKDKYDPAAYARWQKHMAKMTFEQPKTLTLICVDKINKIMSNISSTSIPNNNIAYSDMSDSPTLKHRDSSLQPQTTFEQLLLEKVSQHPENSKNNVAVRLKRVAKGAEVITKSFLEKQQEIELTMEKEIQKTTKRKQKTALQSKNDAFDSVPGPSKIQDKNLKTKETVTNVSVLTENNNTDVYVSKKGKGIGKKTRTGKENDLKVDKHAKQKGKKAIHKLDNKSDQRTSTKTALKKRKRSNSSVTTIESIQMSVHSDSDLLDCLSDILSDCDIWTDFNYYDGNKTDLELAARGQQIEQIVKGIHDVDNNQEGKASQRDDELCEEKCEIEEILEIRTKDTNFQVNDNNKVTILSSVKITPENQVFYKIVPEILQLKPIDKDTDLFANQKRKLSHSTSASNIPKKKTKKVNCPTKTMTKEQKDCSENLNIKIDKDDDIKTKYYSDDAKPYNIGDTVLVRYFKRTWIYYVGVIENNTMSSNPNMYNITFFKTIGKKNNLKFVIPKRKDQDYVPDSNIVKVIELLQINEDPVEYTLMNDDDENFF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -