Epri004214.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Euceroptres primus
Gene Symbol
KRBA2
Assembly
GCA_037177015.1
Location
JBAGKK010000541.1:9866-12222[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 6.4e-05 0.022 17.4 5.2 1 23 241 263 241 263 0.99
2 15 0.0079 2.7 10.8 3.1 3 23 269 290 267 290 0.91
3 15 3.1e-05 0.011 18.4 0.6 2 23 366 387 365 387 0.97
4 15 4e-06 0.0014 21.2 2.4 1 23 393 415 393 415 0.98
5 15 0.0053 1.8 11.4 0.1 2 23 422 443 421 443 0.97
6 15 1e-07 3.5e-05 26.2 0.6 1 23 461 483 461 483 0.98
7 15 5.3e-07 0.00018 23.9 1.2 1 23 489 511 489 511 0.98
8 15 1.6e-06 0.00054 22.4 1.0 1 23 517 539 517 539 0.98
9 15 0.00079 0.27 13.9 0.2 1 23 545 567 545 567 0.99
10 15 0.00047 0.16 14.6 0.2 3 23 575 596 573 596 0.92
11 15 1.8e-05 0.0061 19.1 1.3 1 23 602 624 602 624 0.98
12 15 0.00039 0.13 14.9 4.7 1 23 630 652 630 652 0.98
13 15 4e-06 0.0014 21.2 0.2 1 23 658 681 658 681 0.96
14 15 4.1e-07 0.00014 24.3 1.0 1 23 687 709 687 709 0.98
15 15 1.4e-06 0.00048 22.6 4.2 1 23 715 737 715 737 0.99

Sequence Information

Coding Sequence
ATGCCGACTACAAGTGTATCTcactataaatatttatttgtctaCGAAGACAGAACATCCAGATATGttgttttaaaagctttgcgAAGCATTGATCCAAAAGAGGTGGCAATGAAACTTTTAGATGTGATGGCAATCATTGGCGTTCCTCGTGTTTTACAATCTGAGAATGGTCGCAATTTCACCAAGCAAGTTGTAAACCAATTGCATTCTTTGTGGGATGGATTCAGTATAATTCCCGAAGATGTTATGAAATTGACGAGTgaacgaaatttcaagaatattattaaatcttgGCTGATGAAAAATCCAAATAAGACGTGGCTTGAAAGTATCAAGTTCATTCAAGTCTTTGAAAATGCCACGTTCCCTTGTAAGAACGGGAAATTTCCTTACGAATCACTTTTCAGGCGGAACGTAtatgaggatttttttaataatagtaacGAGCCGAGAAAAGATGAGTTTGCGGCAgaggaatttaaatttgagaacAACTATCACGATGAATGTTCGTCTGTCTCGGATGGCGACAATTCTGATGATGATAAAATTAGTGAAgagaaCGGAGCGACTGGAACCTTCCCGGCCAATCTTTCTGAAGAGAATCTAAGAACCAGTTTTAACTTTGTAAccgtaaaaaatgaagaatcacCTGCGGAGGATTCGATTTCAGAAGAAGAAGTGACATCggtcaaaaagtcaaaagacAAACACACCTTCAAGTGTAAGTTTTGCCCAAAAAAATACACGAAACTAGGCCATTTAACAAATCACTTAAAGTCCCACAAGAATACAACCGAGTGCATcaaatgttctaaaaaattccGCACTCAGGCTCTCTACGAGAATCATATGCATAAATCTCACAAAGAATTGTCCGAAAATCTCTTTAGcaagaaaaatataatgcaaGTCGATactaaaattactgaaattactGATAATTCTGAATTACGTCTAGAGAAAGAAACGCTCACAACAAAAGGAAATACCATTTCAGAAAAGATTTCGAAATCTACAAAGCGTGtttcgaatcttcaaaaaaagtccAAGCTTCGAGAAAAGCGACCAAAGGTTAACGAAGCTTTATTAGAATGCAGCTATTGTGagcaaaaattcgattttcctAGTGTTTTAAAAAGACACATTCGTTCCCACACAAACGAGAGGCCCTACGTCTGTAAGATCTGCAACAAAAGCTTCAAACAACTCGGTCATCTCAGCCAACATTCTATAACTCACACTGATTACAGATCTTTACAATGCAGTCAATGTGGAATCAAACTTGAATCTCTAGATGCCCTCAAGATTCATTCCCAAACTCATCCTGGTGAATCAgctcttaaaaataatttcaatctaCCAACAACTCGTCTTTTCGAATGTGACATTTgcaaaaaagtatttactaCGAAAAGCGTTTTGGAGAGACACATTTTAACTCACACTCACGAGCGACACTTTGAGTGCGAGGTTTGTGGAAAGCGATTCAAGCAATCAGGTCACGTAAAATCTCACATGCTAGTGCACACTGGAGAACGAAGATTCCAGTGTACGATTTGTCCGAAACGATTTAGCTTGGCTAATTCTCTCAAGAAGCACATGTATATTCACAATGGAGATAAACCTTACCAGTGCGACGTTTGTGGTGCCAGATTTTTGGAGAAAAGAAATCTAAATGGACATCTCATGACGCACACGAATGAAAAACCATTCGGTTGTAAACTCTGTGGGAAAAGATACACTTTGGCGGATACTCTGCGACGTCACGTGAGTGCTGCTCACGAGGATGGAAGAACTTATCAATGTGAAATTTGTGCAAAGATGTTTAAACAACTGGCTCATTTGTCTGTCCATAAAAAAGTTCACAATGATGAGCGACCTTTCCAGTGCCATCTTTGCGAGAAGAACTTTAAACATaagaatgttttgaaatctcATCTGGCTATTCATGCGAATGTGAGGCCTTTCGAGTGTGATGAGTGCAAAGCTACTTTTGTTAGGAAGACGAATCTCCAGACTCATATCGCTTCGGCCCATATGAACGAGAGGCCCTATACGTGTAATATTTGTGGAAAGAAATTTAAACAAGTTAGCCATCTGAATGGACATATTATTGTGCATAGTAATTCTATGCCTTATCAGTGTGATTTCTGTGATCGAAGGTGCAACAGGTTAGATAATCTGAAAAAGCACATGAGAATTCATACGAAAAGTACAAAAGAGTTCAATGTACTTGTAGTCAGGTCGGAAAATGTagcttctaaaattatttctgattaa
Protein Sequence
MPTTSVSHYKYLFVYEDRTSRYVVLKALRSIDPKEVAMKLLDVMAIIGVPRVLQSENGRNFTKQVVNQLHSLWDGFSIIPEDVMKLTSERNFKNIIKSWLMKNPNKTWLESIKFIQVFENATFPCKNGKFPYESLFRRNVYEDFFNNSNEPRKDEFAAEEFKFENNYHDECSSVSDGDNSDDDKISEENGATGTFPANLSEENLRTSFNFVTVKNEESPAEDSISEEEVTSVKKSKDKHTFKCKFCPKKYTKLGHLTNHLKSHKNTTECIKCSKKFRTQALYENHMHKSHKELSENLFSKKNIMQVDTKITEITDNSELRLEKETLTTKGNTISEKISKSTKRVSNLQKKSKLREKRPKVNEALLECSYCEQKFDFPSVLKRHIRSHTNERPYVCKICNKSFKQLGHLSQHSITHTDYRSLQCSQCGIKLESLDALKIHSQTHPGESALKNNFNLPTTRLFECDICKKVFTTKSVLERHILTHTHERHFECEVCGKRFKQSGHVKSHMLVHTGERRFQCTICPKRFSLANSLKKHMYIHNGDKPYQCDVCGARFLEKRNLNGHLMTHTNEKPFGCKLCGKRYTLADTLRRHVSAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECDECKATFVRKTNLQTHIASAHMNERPYTCNICGKKFKQVSHLNGHIIVHSNSMPYQCDFCDRRCNRLDNLKKHMRIHTKSTKEFNVLVVRSENVASKIISD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
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90% Identity
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80% Identity
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