Basic Information

Gene Symbol
snpc-4
Assembly
GCA_037177015.1
Location
JBAGKK010159977.1:18719-21425[+]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 6 2.8 1.2e+04 -1.3 0.0 3 14 182 193 181 197 0.84
2 6 7.3 3.2e+04 -2.7 0.0 23 42 243 264 230 265 0.64
3 6 7.8e-10 3.4e-06 29.3 0.7 3 45 276 320 274 321 0.95
4 6 4.5e-12 2e-08 36.4 0.2 2 43 328 373 327 376 0.96
5 6 4.5e-13 2e-09 39.6 0.0 1 44 382 426 382 428 0.93
6 6 3.1e-12 1.4e-08 36.9 0.1 2 42 433 473 432 476 0.96

Sequence Information

Coding Sequence
ATGAGTGATACGGAGGACCAGCACATCCTCGAGGACATTCGAGCATTGGAAGATGCTTTATCCCGGAAAAGTGCATCAGATTCAATACCTGAAGTGCCTTTTAAGACTGAAATAATTCCTTGCACCGATCATCTTGCAGAAGAAACAGACGCGGCCTCGGAACCTTTTTCAAACTCCGAGTCAGTTCCAACCAATAACGAAGAAAATCTCATAGAAGAAAACATCATCGGAAAAAATATCGCAGAAAACCTCATCGAAAATTCTGCTGCATCATTAAAATTGAACCAAGATCTAATCAAACAACTAGTCGCCACTCGCGGCGAAGTTGCTGCAATCCTggaagaatgcaaaagaaaaagaggaatcGTCAATACCAAAATAAAACAGCGTTTAAGAGTAGTAACGACTACGAAAACAGTATCTTCTCATGCTGGAATGCCTTACTTCAAAGATAAAGATTTTTTCTCTGCTCCTCCAAACGAGGACACGAAATTAAAAGATGCTAGAGGAGAACTGCAAATAATTCACCTCCGTCGTGTCTCCCGCTGGACGGCAAAAGATAAAGAGATGCTCTTGAAATCAATTCACCACGAAGTTGTCGCTGGATTGAAGAATCTTAATGAAAATGAGGAAGATGAGGTTGAAAAAATGACGATGGGAAGGAGCCATTCTTTGCCAAGCGTTGTTATAAAAGCCATTGGACCTTTGGGAACGAGGGAATTCGATTGGATGAAGATAGCTGTAACggattttcagaataaacacTCTGCGGAAGAATGTCGTGTTATGtggaatatttttctccatCCGGACATCAATAAGTTCAAGTGGAAAAAGAAGGAACTCACGGATTTAGAAAAGCTTGTCAAGAAGTACAAGTATGAAAACTGGGACGCAATTGCCAAGGACTTAGGTACGAAAAGAAGTGGCTACCAGTGTTTCGTGAAGTACAACACGGTCAAAAAGGTGCAACAGAACGATAAACCCTGGACAAAACAGGAAGACAAGAAGGTCATCCAGTTggtaaataaattcaaaataggcGATTTCATTAATTGGGGAGATGTCGCGAGTTGTGTCAAAAACAGAACCAAACAGCAAATCTACTTTCGATGGATGTACAGTCTCGCTCCTCATTTAAAAAAGGGAAGATTCACTGAAGAAGAAGACAAGCTTCTGATAGACGCCATCGAAAAGTATGGtctcaacttcaaaaaaatatcaactctCGTCTTGCCAACAAGAACTTCCGCCCAGCTGAGTGATCATTACAATACCATTGCCAACAAGGAAGAAAATGTCTGGACCATCGAGCAGGATGAAAAACTTCTCAAATTGTACCACGAATATGGAACGGACTGGGCCAAAATAGCAACCTTCTTCGATACCAAAGGCAGGGTTCAAGTTCGTCACCGATATGCTGCCCTCGTTCGATACGAAAAAAAGGGACTCAGTCTCAACGAAATCCCAAGGAATATTTCCAAGGATAAAGGCCCGAAAGAAGTTGTAGTTTTCCATAAAATCCCGATAAACACTGGAACAAAAGCTGCTGTAGGTAAGGAGCTCGACGAAGTGGACAAGGAAATAATCAAGTATTTCCAGAACGCAAATGCCCCACCTTCGAGACCTGGTCGCAAACAAAAGTTTTACACTGGAAAGGAACTGGAATTCACAACCAGGAAAATGTACAACACTCTCCAGTTAATGAGTGCTAATCTGAATATTGGCTACGATTTGGACGAGTTCGATTGCCTCAGTGAGAAAGACAAACAGCTTTTGAGTTCGCTGAAGAATATTTCCCATGATGCGACCTATGGAGCCTTTTCTAGAAAGGTGGAACAAATGCGACTCATGATGTTCGATTTTGGTCTCCATTCTCGGGAAGgagaagaagcagaagaagatGAACATTTCATACCTCCTTTGCCTTTCGGTGGTTATATGAAGACGAATAAAACTCATCGAATAATAAATTACGTCCCCGTCGATTCTCATCTTCTAGAAGATAGAGAAAAGACCTTCGAGACACCCTTGAATGTGATCGAGGCAATCAGCGAAGATGTGCACATGGAATTTGACAAAATTGGTGAACTGCTCGTCAGGCCGAATTACAAATCCGAGAGACAAGCTATTCAGACTATTTATATATTGACGCCTGAAGATTtgataaaaaaggaaatgtCGAATCGAAACCAGGAAGTTCAGGTGCAGGTCCAATCTTTGCCAAGTACCTCGACAGCTTCAAATTCAGACGTTAGAATTTTACGTTCTTACAATAAAAGGAATGCGTTTCACGAGATCGATACGGAGAATTTCCCTACGATGAAACCAAGTTTTGCGACGTTACTCGGATACCAGGGAATCCTCAATGCAAGCAAAGTGATGAATGCAGGGAATGTGAAAAGTTGTGCGGATCTTGAAGGAAAAAAGATGCCAGAGAAAGTAAAGGTGGCTTTAGATTTACTGAGGATACGCTTagtacaattatttaaatatcccATTATCATGTCACAAGTTATGCCACCAgaaaatattcatgaaaaagaATCGATTTTCCTGTTGCCGGAGAAGAGAACAAATTACTCTGAAGGTCCTagtagaaaaaagagaaaaacagaGGGAAAGTAG
Protein Sequence
MSDTEDQHILEDIRALEDALSRKSASDSIPEVPFKTEIIPCTDHLAEETDAASEPFSNSESVPTNNEENLIEENIIGKNIAENLIENSAASLKLNQDLIKQLVATRGEVAAILEECKRKRGIVNTKIKQRLRVVTTTKTVSSHAGMPYFKDKDFFSAPPNEDTKLKDARGELQIIHLRRVSRWTAKDKEMLLKSIHHEVVAGLKNLNENEEDEVEKMTMGRSHSLPSVVIKAIGPLGTREFDWMKIAVTDFQNKHSAEECRVMWNIFLHPDINKFKWKKKELTDLEKLVKKYKYENWDAIAKDLGTKRSGYQCFVKYNTVKKVQQNDKPWTKQEDKKVIQLVNKFKIGDFINWGDVASCVKNRTKQQIYFRWMYSLAPHLKKGRFTEEEDKLLIDAIEKYGLNFKKISTLVLPTRTSAQLSDHYNTIANKEENVWTIEQDEKLLKLYHEYGTDWAKIATFFDTKGRVQVRHRYAALVRYEKKGLSLNEIPRNISKDKGPKEVVVFHKIPINTGTKAAVGKELDEVDKEIIKYFQNANAPPSRPGRKQKFYTGKELEFTTRKMYNTLQLMSANLNIGYDLDEFDCLSEKDKQLLSSLKNISHDATYGAFSRKVEQMRLMMFDFGLHSREGEEAEEDEHFIPPLPFGGYMKTNKTHRIINYVPVDSHLLEDREKTFETPLNVIEAISEDVHMEFDKIGELLVRPNYKSERQAIQTIYILTPEDLIKKEMSNRNQEVQVQVQSLPSTSTASNSDVRILRSYNKRNAFHEIDTENFPTMKPSFATLLGYQGILNASKVMNAGNVKSCADLEGKKMPEKVKVALDLLRIRLVQLFKYPIIMSQVMPPENIHEKESIFLLPEKRTNYSEGPSRKKRKTEGK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-