Basic Information

Insect: Eucera pruinosa
Gene Symbol: gtf3a
Assembly: GCA_028830335.1
Location: JAMYCR010000018.1:8775655-8780496[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 5.9e-05 0.0075 17.5 0.1 2 23 882 903 881 903 0.97

2 17 0.62 79 4.8 0.7 1 19 909 927 909 929 0.91

3 17 0.72 91 4.6 0.7 2 23 936 957 935 957 0.95

4 17 0.00032 0.04 15.2 1.2 3 23 966 987 965 987 0.98

5 17 0.0032 0.41 12.0 2.0 1 23 994 1017 994 1017 0.95

6 17 0.00011 0.014 16.6 0.7 1 23 1023 1046 1023 1046 0.94

7 17 1.6 2e+02 3.5 2.5 2 23 1054 1074 1054 1074 0.94

8 17 1.7e-07 2.1e-05 25.5 2.1 2 23 1080 1101 1079 1101 0.97

9 17 2.7e-06 0.00034 21.7 0.2 1 23 1107 1129 1107 1129 0.99

10 17 0.00067 0.085 14.1 2.4 2 23 1141 1163 1140 1163 0.95

11 17 0.0095 1.2 10.5 2.5 1 23 1169 1192 1169 1192 0.96

12 17 0.03 3.8 8.9 3.8 3 23 1215 1236 1214 1236 0.95

13 17 0.0014 0.18 13.1 1.4 2 23 1243 1265 1242 1265 0.96

14 17 4.6e-05 0.0058 17.8 1.0 2 23 1273 1294 1272 1294 0.96

15 17 0.0014 0.18 13.1 2.3 1 23 1300 1323 1300 1323 0.96

16 17 0.39 49 5.4 3.2 2 23 1330 1351 1329 1351 0.96

17 17 0.011 1.4 10.3 2.6 1 23 1357 1379 1357 1379 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	5.9e-05	0.0075	17.5	0.1	2	23	882	903	881	903	0.97
2	17	0.62	79	4.8	0.7	1	19	909	927	909	929	0.91
3	17	0.72	91	4.6	0.7	2	23	936	957	935	957	0.95
4	17	0.00032	0.04	15.2	1.2	3	23	966	987	965	987	0.98
5	17	0.0032	0.41	12.0	2.0	1	23	994	1017	994	1017	0.95
6	17	0.00011	0.014	16.6	0.7	1	23	1023	1046	1023	1046	0.94
7	17	1.6	2e+02	3.5	2.5	2	23	1054	1074	1054	1074	0.94
8	17	1.7e-07	2.1e-05	25.5	2.1	2	23	1080	1101	1079	1101	0.97
9	17	2.7e-06	0.00034	21.7	0.2	1	23	1107	1129	1107	1129	0.99
10	17	0.00067	0.085	14.1	2.4	2	23	1141	1163	1140	1163	0.95
11	17	0.0095	1.2	10.5	2.5	1	23	1169	1192	1169	1192	0.96
12	17	0.03	3.8	8.9	3.8	3	23	1215	1236	1214	1236	0.95
13	17	0.0014	0.18	13.1	1.4	2	23	1243	1265	1242	1265	0.96
14	17	4.6e-05	0.0058	17.8	1.0	2	23	1273	1294	1272	1294	0.96
15	17	0.0014	0.18	13.1	2.3	1	23	1300	1323	1300	1323	0.96
16	17	0.39	49	5.4	3.2	2	23	1330	1351	1329	1351	0.96
17	17	0.011	1.4	10.3	2.6	1	23	1357	1379	1357	1379	0.98

Sequence Information

Coding Sequence: ATGCGGCGCATTGAAGTTAACAACAAGGATCACAACTACAGTGAAGTAAAGCTAGATAGTGTTCAACGCGGCGGGAGTAGCGTTCAAAATGCGTGCGATGGCGAGCTCAAAGCGATATGCAAATCTGGCAAATCTGGATCAGCGTCGAGCAAGGAGACGTTCGGTCAGGTCAAAGACATCGACGAGCTAAAAAAAATAACGCCGCGCGTAAAGATATTGACCCACGATGCGAGCAGCCTGAACGAGTTGACGAAGATTTCGTTGCACACCAAAATATCCGCGCAAAAGAGGCGCGCGATAATGGAGCAGACCAAGCAGGAGTTGAAAAAGTATTGCAGAACTTGCGCCGGCTTGAAGCTGCCGCTGGTCGATATTTTTAGCGAGAAGGGCAATCAGATGAGATTGAATCAGCAGATCAAGCACCTGGAGGAAATAAATCCGCACGACAGTCTGTCCACTCAGATGTGCATGGACTGCATCTGCGACCTGAAGATGAGCTACaagttttttatgcaaatcaaaAAAGCCGAAGTCAAGCTGAAATCTATTCACGTTACTCTGACCGACACGGCGGCGAGAAATCTAGAATTAAGCAGAATAGAGGCTGTAGCAAATTCGGAGAAGCGCATCGCGGAGGTAGAGAGCGTGCTAGAGTATAGCGCGACGAATCCGTCTACCAGCAAAGAGAGCAAGGAACGCGAGCCGAAAGTATTGGAAGTTTCGGCGAAATGCGATTCGGAATGCTCGAGGATCGAGCCGCCGGTACGCTCGAAGATCGAGCCGCCGGTACGTTCGAAGATCGAGCCGCCGGTACGCTCGAAGATCGAGTCGCCGGTACGGTCGAAGATCGAGCCGCCGGTACGTTCGAAGATCGAGCCGCCGGTACGTTCGAAGATCGAGCCACCGGGACGTTCGAAGATCGAGCCGCCGGAACGTACGAAGATCGAGCCGCCGGGACGCTCGAAGATCGAGTCGCCGGAACGTACGAAGATGGAGCCGCCGGGACGCCCGAAGATCGAGACGCCGGGACGCCCGAAAATCGAGACGCCGGAACGCTCGAAGATCGAGCCGCCGGTAGAGCGCGAGAAATCGGAGATGAAAGTGGGGGACGCGGAGATATTCGAGGATTCGATCGCTCGACAGAACAGCGATGACAACGAGtcgatagaggagttcgatccGGACGATCCTCCGTTTCAGCCCGACAGCTCCGATGCCGCGGACTCGGACGACGACGTGGAAATACCGAACGTCAAGAGGCGACGCATTCACCAGAAAGAGAGCACCGTGCAATGTTCGCAATCGATTTTTCTTTCCGACAGCAACTCCGCTTCGGAGAGCAAAAACCTCCTCGAGTCGAGCAAAACCACGTACAATTACGACGCTTGCCTGAGAACGTACGTGAAAGTGGACGACCGAGAGAGCAATAATTCGCACGGCTTGGCTAAATCCGAAGTCGCGTGCACGAGCGAAAGTACAAAGGAATGTTCGAAGCAGCCGAACATTCTCAAGCGCCGGCTTCTGTTGCAAACTAAAAAGGAATGGCCGGAGGAGAGCGACGAGAACGTCTGTCAGTCGAGCGTCTCCGACAAGACCGCTGGTCACAAAGACTTTAAAGTACAAAAGCTAGACGTTAACAATTCGCTGAACATAAACAGCAACGAGGAAGACGGGATCATGTACGTGACCGTAAAGGGATCCAAGCCTAACGAGATACTGCTGGTGAAGGTGAAGAAGATGGACAAACCGATGGAGAAGAAGGACGACAAGTCGACGGGGAAGAAGAGCTTGGACATTAAGCCGATGGAGAAGATGTTGAAGCGGTACGAGACGCTCGCGACGAAGGAGAAAGACTTGTTTCCGGAGCGAACGAAGAAGTCGGAAATAAGGGAACAGATCATCGAAGAGCAGATCGAGGAGTACAAGAAGAAGCGGGAGAAGGTGCTGGGCGGGCACGCAAATATCTCCCTTACACTTAAACTGGAGGAACCTCAGGCTCGCTACTCGAAGCGAAACGAGAGCCAAGATAGCCAAAGATCGTTCGCGCAGCTGGAGAACGATTCCGTGGCGAAcgcgaactcgaacgcgaacgcgaacgtgaacgtgaacgcggacgtggacgtggacgtggacgtggacgtggacgtggacgtggacgtggacgtagacgcggacgcggacgcggacgcggagTTGGAGAAAGAGGAGAGGGAGGAGGATAGCGAGGGCGACGGAAATATCACGATCGAGCAAGACATTTTGGAAATGGTGGAATCGGCGAAGGAGAAATCGCCGAACGAGAAGTCGTACGTGAATACCGAGGAGTATTTGTCGCGTTTGGCGAAGCTGAGGCTGAAGTGGGACgaggcgaagaagaagaaggagtcTCTGCAAAAGGAGCTGGACGAATCGTACACGGAAGGGAACATCGAAAAGTTGGCGAGAATTCTAGGGGAGAAGGAGAAGAACTtgcaagactttcaagactacTTGAAGCAGCGGAAAATAGTGATCACTAGATTGAAGGACGAGGATATCATTTCTCTGTACGAGGACAGAAACAACGCGGTACTGAAGAACAGCTTGCCGGACTTGATCGACGAAAGCCAGCCGGTCGACTATATCCCGGAGGAGCACTACTTGGAGTGCGACTACTGCCCGAAGACGTTCGCCTCCAGGGAAGTGCTCGAGGAGCACCTAAAATCGCACGACTACAAAATTATGCACTTCTGCGAGGACTGCACGGAGGAGTTCCCCACCAACAAGGCGAAAAGGAATCACAACGCGATCTGTATAAAAAAGCTAATATGTAAATACTGCGACGCTATGTTGGACTCGAAGGGGAAGAAGCGGCAGCACGAGCAGAAGCACTGCGACAGCATGTACGGGCAACTGTGCGACGTCTGCGGGGAGAAGTTCAAACACCAAGGGACGCTCGATCAGCACGTGAAGACGCAGCACATGAGCTGGGAGAAGATATACCAATGCCCAAAGTGCCCGAAGAAGTTCGCCTTCAAGCAGAAGCTCAGCTTTCATCTGAAGTCGGTGCACACCACCTTGAGAGCCTACCTGTGCGAGGACTGCGGGGCCGACTTCAAGAACCCGGCCAGCCTCAGACATCACAGAATACGGAAGCATCAGCCGGTCGGCAACAAGAGAGAGTGCCCGGTTTGCCACAAACTGGTGCCCTTCTACAGCCTCTCGAAGCACATGCACACCCACAAAGCGTACACCATTCAGTGCCCGCACTGCGACAAAATGTTCAAGAACAGCTCGACGTTGAAGCAGCACGTAAGGATCCACGAGGATCAGCGTCAGTATCGATGCGACACGTGCGGCGTCGGCTTCAACAGGCGGGACGGCTTGCGGCTGCACATGCGAGTGCACGAGAAGACGGACAGCCGGGGCCTGAAGGAATGCTCGTGTCAAGTGTGCGGCGAAAAGTTCCCCAACCACTCGACCCTCGTTATACATAGAAATCGCGTTCACAAGGACGGCAGGCAGTACACCTGTCACATATGCAACAGGTCCATGATCTCCACGAGATCGCTCGAGTGGCACATGTCCCACATTCACAACGAATCGCTTCCCGGAGTGGTGAAGGAGGAGATAGACGGCCCCTCCGAGAAGAAGAGAGCCTCCTGCTATCACTGCAACAAGACCTTCAAGACGGAGATGATCTTGCGCACGCATATCAAGAACACGCACATGGAGAAGGATCCGATGAAGTGCTTGGACTGCGAGTTGACGTTCACTTCGGAGGTGAGGCTGAGACATCATATGATGGTGACGCACAACAGATTGGAAGGAACGTTGCCGTGTCCCCATTGCCCGAAGAGATTCGTGAATCAGCTCAGGCTAAAGACTCATATGATATCTCACTCGGAGGAGAGGCCGTACACTTGCGAGATCTGCGGCTTCAACTTGAAAACGAAGATCCAGCTGATCAAGCATCACCAGAACAGGCACAGCGACGAGAGGCCGTTGCAGTGCAGATACTGTCCTTGGCGATGCAAGCAAGTGAGCGCTCTGGTCTGCCACGAGAGAACTCACACGAACGAACGACCCTACTCTTGCAGCGTCTGCCGGCAACGTTTCAAATACTTGGGCGACAAGAACAAGCACGAGAGGCGGCACGAGAGTCTGGGCGGGTCCGGATTCAAGAGGATAGTGCTCGGCCGCAATCTGAAAGCGAAAGCGCAAGAAGATTCCTCGTCTTCGGAGCAGGAGCAGGAGCAGGAAGCTCTGACGAATGCGGAGCCTCAGCTGGTCGAAGGCGAATACCAAGAGCAAACCGATCAGCAGTTCGAAGAGGAGCAGATAGTGAAGTTCGAGGAGAAGCAAATAGTGAAATTCGAGGAGCAGGAGATAGTGAAATTCGAGGAGCAGGAGATAGTGAAATTCGAGGAGCAGGAAATAGCGGAGGAGTATGAGCAGGTGTACGAGCAGGAGTACGAGGAGACGTCGAGGGAGGCCTCGGACGCGGCAGAGGTGATCATGAACATGGAAGACACGACCGTTTACACGGAGGAGGTGACCGCGGACAACATGGAGCCGGAAGAGATGATCACGGACGAGATGATGACGAACGAGATCCTGCAGTCGGGCGCGGTGGTGCACTTGCAGCAGGAGGACGGCTCGGGAAAGATCCAAGTGATCCCGGTGATGCTGTCTCTGCCGGATCTGTCGGACGCGAACACAGAGGTGAACTTGGCCACCGCGTCCAtcatgtataataattaa
Protein Sequence: MRRIEVNNKDHNYSEVKLDSVQRGGSSVQNACDGELKAICKSGKSGSASSKETFGQVKDIDELKKITPRVKILTHDASSLNELTKISLHTKISAQKRRAIMEQTKQELKKYCRTCAGLKLPLVDIFSEKGNQMRLNQQIKHLEEINPHDSLSTQMCMDCICDLKMSYKFFMQIKKAEVKLKSIHVTLTDTAARNLELSRIEAVANSEKRIAEVESVLEYSATNPSTSKESKEREPKVLEVSAKCDSECSRIEPPVRSKIEPPVRSKIEPPVRSKIESPVRSKIEPPVRSKIEPPVRSKIEPPGRSKIEPPERTKIEPPGRSKIESPERTKMEPPGRPKIETPGRPKIETPERSKIEPPVEREKSEMKVGDAEIFEDSIARQNSDDNESIEEFDPDDPPFQPDSSDAADSDDDVEIPNVKRRRIHQKESTVQCSQSIFLSDSNSASESKNLLESSKTTYNYDACLRTYVKVDDRESNNSHGLAKSEVACTSESTKECSKQPNILKRRLLLQTKKEWPEESDENVCQSSVSDKTAGHKDFKVQKLDVNNSLNINSNEEDGIMYVTVKGSKPNEILLVKVKKMDKPMEKKDDKSTGKKSLDIKPMEKMLKRYETLATKEKDLFPERTKKSEIREQIIEEQIEEYKKKREKVLGGHANISLTLKLEEPQARYSKRNESQDSQRSFAQLENDSVANANSNANANVNVNADVDVDVDVDVDVDVDVDVDADADADAELEKEEREEDSEGDGNITIEQDILEMVESAKEKSPNEKSYVNTEEYLSRLAKLRLKWDEAKKKKESLQKELDESYTEGNIEKLARILGEKEKNLQDFQDYLKQRKIVITRLKDEDIISLYEDRNNAVLKNSLPDLIDESQPVDYIPEEHYLECDYCPKTFASREVLEEHLKSHDYKIMHFCEDCTEEFPTNKAKRNHNAICIKKLICKYCDAMLDSKGKKRQHEQKHCDSMYGQLCDVCGEKFKHQGTLDQHVKTQHMSWEKIYQCPKCPKKFAFKQKLSFHLKSVHTTLRAYLCEDCGADFKNPASLRHHRIRKHQPVGNKRECPVCHKLVPFYSLSKHMHTHKAYTIQCPHCDKMFKNSSTLKQHVRIHEDQRQYRCDTCGVGFNRRDGLRLHMRVHEKTDSRGLKECSCQVCGEKFPNHSTLVIHRNRVHKDGRQYTCHICNRSMISTRSLEWHMSHIHNESLPGVVKEEIDGPSEKKRASCYHCNKTFKTEMILRTHIKNTHMEKDPMKCLDCELTFTSEVRLRHHMMVTHNRLEGTLPCPHCPKRFVNQLRLKTHMISHSEERPYTCEICGFNLKTKIQLIKHHQNRHSDERPLQCRYCPWRCKQVSALVCHERTHTNERPYSCSVCRQRFKYLGDKNKHERRHESLGGSGFKRIVLGRNLKAKAQEDSSSSEQEQEQEALTNAEPQLVEGEYQEQTDQQFEEEQIVKFEEKQIVKFEEQEIVKFEEQEIVKFEEQEIAEEYEQVYEQEYEETSREASDAAEVIMNMEDTTVYTEEVTADNMEPEEMITDEMMTNEILQSGAVVHLQQEDGSGKIQVIPVMLSLPDLSDANTEVNLATASIMYNN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -