Epru011107.1
Basic Information
- Insect
- Eucera pruinosa
- Gene Symbol
- -
- Assembly
- GCA_028830335.1
- Location
- JAMYCR010000007.1:10445104-10449315[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.71 89 4.6 5.6 2 23 243 265 242 265 0.96 2 19 0.022 2.7 9.4 1.4 1 23 315 337 315 337 0.97 3 19 0.028 3.6 9.0 2.1 1 23 386 408 386 408 0.98 4 19 0.08 10 7.6 0.1 1 20 466 485 466 487 0.93 5 19 0.00036 0.046 15.0 1.9 1 23 527 549 527 549 0.98 6 19 0.00079 0.099 13.9 0.1 1 23 596 618 596 618 0.97 7 19 0.00065 0.082 14.2 0.1 1 23 624 646 624 646 0.97 8 19 1.9e-07 2.4e-05 25.3 0.5 3 23 691 712 690 712 0.96 9 19 0.0042 0.53 11.6 0.7 3 23 721 742 721 742 0.98 10 19 3.8e-05 0.0048 18.1 2.7 1 23 749 772 749 772 0.98 11 19 0.00014 0.018 16.3 0.3 1 23 780 802 780 802 0.96 12 19 0.15 19 6.7 0.2 1 20 857 876 857 876 0.96 13 19 0.0049 0.63 11.4 0.1 1 23 895 917 895 917 0.98 14 19 6.2e-05 0.0079 17.4 1.2 1 23 931 953 931 953 0.98 15 19 0.00048 0.061 14.6 3.4 2 23 976 998 976 998 0.94 16 19 0.018 2.3 9.6 1.5 2 23 1051 1073 1050 1073 0.93 17 19 0.0077 0.98 10.8 0.6 3 23 1103 1124 1102 1124 0.93 18 19 0.033 4.1 8.8 0.1 1 23 1135 1159 1135 1159 0.97 19 19 0.0072 0.91 10.9 0.3 2 23 1217 1239 1217 1239 0.94
Sequence Information
- Coding Sequence
- ATGGACGAGGTGGTGGAGTTGCAAAACATGGAAAATGTGTGCAGACTCTGCCTCTCTACCGACGAGCCAAAAATTTCGGTGTTCGGAGAAGATTCTTCAGTGTCGCTGGCTAGTAAGATACAAGTTTGCTTGTCAATCCAGATTTCAAGTACGGACAGATTATCATCCCAAATATGCGCGCAATGCGTTAGAAATATAAATCAATGGCATGATTACAAAGAAGCATGTCTTCGTTCCCAAGATAAGCTGCATCAATGGTTGGAAAAACATTTGCAAAGTCCTATgGTTATAACTATTAAGGATGAACCTGTTGATTTGGATTTCTATGAAGACAATATTGAAGTTATTTCTGAATCTACCAATGATTCAGACACGgaAAATTCGAATCTTGTCAAGAATGTAGATAACTTAGAGAATCATATTGAAGTGCAAGATTTATCAGATGATGAAGTAGAGGTAGATCATATAGCTGAAGACCAACCAGCTTTAACAAAGGATATAGATGTTTCTGTAAAAGCTGAACTGCAAAAAGACTATGACACAGATTGCACTATAGAAATAGAATCTGTTACTGGTAGTGAGCTTGTATTGAATCCACTCTCAAATGCAGAGGACAGAATTATGGAAGCGGATTCCACACAAAAATTTAATGCATCATCGGCAAGCAAAAAAAAGCAAAGAAGAGGTCCGCATACGCATTTCAGGGGTGCTCGAGTTTACAAACAAAAATGCGTACATTGTCAAATCAATTTGCATTCAAAATATAGCTACACAAAGCATATGGAACGATTTCACAGTGATAAGCAAAATGGTAGTGCCAATACGTCCGAATTACAAGATGAAGAAGAACTTATTGAAGATTTAGAAGATGAATTAATGAGCATGGAAAAGGATGCTCCTTTGACGCAAGTGCAGCAAAATATTATCAGTCAGCTAAAGACTTTCTCATGTTATTCTTGTGAGCAATCTTTCAATGATCGCAGAACTACCCTTGCACATATTCGTCAACATATGCCAGATTTAAGACCGTATACATGTATTGCATGTTTGACTGAGTTCCCAGATCGATCAATGTATAAACTGCACTGTGGAGCTTCATTCGAATGTGCAATGAAGATTGCACTGATTATACCAAAACAAGGTGAAGAGAAATATTTCACGTGTAACATGTGTTTGCGTTCTATGAAAGACAGAAAGCAATTGCTTAGTCATTTATCGAAACACTCAGATAAACAATACGAAGAATTAGTATCACCTTCGCGATCTCCTCCTAAATTGAAGCCAATGGCTCCTTTGCCACTTCCTGCACTAGAAGTAAATCGCCCGACAAAAAACTCGTCCGAAGGTGGTTTGAACATACCGCGCCCCTACAAAAACGGCGACCCTGCACACAATCACGCATGTGATTTGTGCGGCATGATCTACAGATACAGACCAAATATGGTAAAGCACAGAGACCTTTGTCAACGTTTATCTCCTGACGTTAGAACGTCCTACAGGTGTATCCATTGTGGCATGACGTATCTCGTTTTCAAAAAGTTTCACAGTCATATAACGGTGGATCACAGAAAGAAAGAATTTACATGCTCCGAATGTGGCTCTAAATTTAGATCTCCTGGTGATTTTCTGGACCATCACAAAAGTCATCGTACAGGGCGCAATAAGCAAAGCCATGAGGTAAAGAGCGAGTCTATTAATTCTATGCAGAACATTTCAACGCCCATCAAAGACTGGGACACGTTCGAGGCGGAAGTAAAcgctaataaaataatggcTAGTAATCATTATAGTTGCGCTCTTTGCAATTTGGAATTTGCTACAAGAGCCGAGCTTACCGAGCACAGAAACCTTCATTTGAAGGTAAAAATTTATTCTTGCGTTATTTGTCGCAGTATGTTCAGTAGCGCGGGTGCTCTGGAAGTTCACATGAAAGATCACGGTATAGAAGATGCAAACGAGAGAAATGCGAATGTTTCATGCGTAGAATACGGCACGGTTGTGGAAGATTCACGAGATTCAAGTTCGATGAATGCGAGCGCGTCTTCGGACCCCGGCGCGACTAAGAACGATTGCGATATGTGCGGCAAAGTATTTTCTAACAATGCGAATCTTAAAAGACACATTAAAAACCTTCACAAGCATGGCAAAGCGCATGTGGGCTGTACGCAATGTACGCGTATGTTCAAGAGCAAAGAGGCTCGCGCGAGACATATCGCAACTGAGCACACGAAAACGAAGACAATGCACCAGTGTTCTCAATGTCCAAAGGCTTTCGTTTACAGAACGAATCTGCATCTTCACATTCAGACCGCTCACGGCGAAAAATCGTACGGCTGCCATAAATGCGACATTTGCGGCAAAGAGTTTGCGGAGGAAGTATCTCTAAAGATACACAGAAGCTGGCATAATCGAGCGAATTCGCGGTTAAGCACTCGTTTTATGAAAGAGGAGGACAAGAAACCATTGATTACACCCAAACAAGAAGAACCGTTCAATGCAGCTACCGGAAGGCCAGCTAGAGCTCGCAAATCCTTCCCCAATTCGCCTCCCGCGAAGCCCATTGGCAATTTCCAATGTCAAGTTTGCAGTGATAAATTCAGCGATGTAACAGAGTTGAGAGAACATTTGTGGGATGTACACTGTGCCCGCAACAAAGGTAAGAAGAGTTTAACAGGCGACGAGTTCCAGTGTGAACTCTGCACGAATATTTTTCCTGACAAGGAAACGTTGGACGTGCACTTGCAGTGGCATAAGGCTCATCCTATCCTCTGCGAGCCTAAACCACGCAATTTCCCCTGCGAAACTTGTGGAAAGCTTTACAGTTCCAAGAAAACGGTAACGAGACATATGAAGCTTCACAAAGCCACCGCAGTGGCAACCGCAAAATTGCATTCATTGGCTAAAACTTCTGGACAAAGCCACCCGACGTGCAACATTTGCCATAAGGTTTTCCAAAGCAATCAAACGTTGCAACGTCACAAGTTAAACATGCACAGAGGCGCGTTCGGCCACCAACAATCGCAAACGATATTCAATAATGCTTCAAGAACGTCTCAAGACGAATCGAAATCCAAAAAGATAAAGTTGGAGGAGGAAGATAGGAAAATGCCGTTTGCTATGGATGCCCTGAATGCAGGCAGGAAGTCGGTAATGTGCCACGTCTGTAGAAAATTCTTCGCGAACATGAGCGTGCTGTACAAGCACAAACAATTGGTTCATAATAAGTCCAACCCGATAAAGAATCTTTCAGCGACCCTTATAACAAACGAATGCATCCCCATACAAACCAACGATGGCCAAGTCGCCTGTAACGTCTGTTACAAAAAATTCCCTGGAATGTCGAATCTGCGTCAGCATTTCACCGTGAAGCACACGAAAGCAACGGAACCCAACGTTCCGCAGTATACTTGCTCCATAGACGGTTGTAAGCTCATGTTTGGAAGTGCAATAACTCTAAAGAATCACGAAATTTCCCACTCCAGCATGATCTTCAGCTGTATTTTATGCGAGAAACACGTGTTTAATAGAGCAGCGGTATCGAACCATATGTGGACGGTGCATAAGACCTCTTACGATGCAGAGCATAGCAAAACTCTTCATCGAGAGATGGATTTGTGCTCCTATTCGGTAGATGGTGCGGTAGATGCCGTTTGCCCTCGATGTGACATCAAGTACCCTAATAAtagagctttgaaaattcactACTTCAAGTTTCACGAGGGGAAGAATGAATAA
- Protein Sequence
- MDEVVELQNMENVCRLCLSTDEPKISVFGEDSSVSLASKIQVCLSIQISSTDRLSSQICAQCVRNINQWHDYKEACLRSQDKLHQWLEKHLQSPMVITIKDEPVDLDFYEDNIEVISESTNDSDTENSNLVKNVDNLENHIEVQDLSDDEVEVDHIAEDQPALTKDIDVSVKAELQKDYDTDCTIEIESVTGSELVLNPLSNAEDRIMEADSTQKFNASSASKKKQRRGPHTHFRGARVYKQKCVHCQINLHSKYSYTKHMERFHSDKQNGSANTSELQDEEELIEDLEDELMSMEKDAPLTQVQQNIISQLKTFSCYSCEQSFNDRRTTLAHIRQHMPDLRPYTCIACLTEFPDRSMYKLHCGASFECAMKIALIIPKQGEEKYFTCNMCLRSMKDRKQLLSHLSKHSDKQYEELVSPSRSPPKLKPMAPLPLPALEVNRPTKNSSEGGLNIPRPYKNGDPAHNHACDLCGMIYRYRPNMVKHRDLCQRLSPDVRTSYRCIHCGMTYLVFKKFHSHITVDHRKKEFTCSECGSKFRSPGDFLDHHKSHRTGRNKQSHEVKSESINSMQNISTPIKDWDTFEAEVNANKIMASNHYSCALCNLEFATRAELTEHRNLHLKVKIYSCVICRSMFSSAGALEVHMKDHGIEDANERNANVSCVEYGTVVEDSRDSSSMNASASSDPGATKNDCDMCGKVFSNNANLKRHIKNLHKHGKAHVGCTQCTRMFKSKEARARHIATEHTKTKTMHQCSQCPKAFVYRTNLHLHIQTAHGEKSYGCHKCDICGKEFAEEVSLKIHRSWHNRANSRLSTRFMKEEDKKPLITPKQEEPFNAATGRPARARKSFPNSPPAKPIGNFQCQVCSDKFSDVTELREHLWDVHCARNKGKKSLTGDEFQCELCTNIFPDKETLDVHLQWHKAHPILCEPKPRNFPCETCGKLYSSKKTVTRHMKLHKATAVATAKLHSLAKTSGQSHPTCNICHKVFQSNQTLQRHKLNMHRGAFGHQQSQTIFNNASRTSQDESKSKKIKLEEEDRKMPFAMDALNAGRKSVMCHVCRKFFANMSVLYKHKQLVHNKSNPIKNLSATLITNECIPIQTNDGQVACNVCYKKFPGMSNLRQHFTVKHTKATEPNVPQYTCSIDGCKLMFGSAITLKNHEISHSSMIFSCILCEKHVFNRAAVSNHMWTVHKTSYDAEHSKTLHREMDLCSYSVDGAVDAVCPRCDIKYPNNRALKIHYFKFHEGKNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -