Epru008831.1
Basic Information
- Insect
- Eucera pruinosa
- Gene Symbol
- -
- Assembly
- GCA_028830335.1
- Location
- JAMYCR010000005.1:17746810-17751871[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00073 0.092 14.0 0.2 2 23 267 289 267 289 0.95 2 17 0.00012 0.015 16.5 3.1 1 23 293 315 293 315 0.97 3 17 0.0046 0.58 11.5 3.5 2 23 322 344 321 344 0.94 4 17 0.00046 0.058 14.7 0.8 1 23 351 374 351 374 0.96 5 17 0.33 42 5.7 0.2 1 13 379 391 379 398 0.84 6 17 1.6e-05 0.002 19.3 0.9 1 23 409 431 409 431 0.97 7 17 0.00051 0.064 14.5 7.6 1 23 435 458 435 458 0.95 8 17 5.2e-06 0.00065 20.8 0.9 2 23 463 484 462 484 0.97 9 17 1.8e-06 0.00023 22.2 0.7 1 23 490 512 490 512 0.99 10 17 0.01 1.3 10.4 0.4 2 23 668 690 668 690 0.92 11 17 0.0058 0.74 11.2 2.7 1 23 694 716 694 716 0.98 12 17 0.00013 0.016 16.4 2.1 1 23 722 745 722 745 0.97 13 17 2.1e-05 0.0027 18.9 4.3 1 23 752 775 752 775 0.98 14 17 1.2 1.5e+02 3.9 8.9 1 23 810 832 810 832 0.97 15 17 0.00054 0.068 14.4 1.6 1 23 836 859 836 859 0.96 16 17 0.0039 0.49 11.7 0.5 5 23 869 887 866 887 0.92 17 17 1.2e-05 0.0015 19.6 3.0 1 23 893 915 893 915 0.98
Sequence Information
- Coding Sequence
- ATGAAACTTATACCAGTGGTAAAGAGATACGCAAACTCTAAGAATCGTCCGGAAATCGTGAAAAATGGGGACGTAGTTCCTAACAAAATAGTGTTGATCAACGATACGAATAGTTTAACCAACGTTTCATCcggaaatgtaattaatccagCTTTGATTCCAAACAAGATGTCGGTTAATAACGATATACTATTAAACACGCTTAATAATACTTTGTCGTGCAACATTATtggcaatattaataatgtcGGATCGGTTGTTGGACCCTGCAACAATAATATACCTTTGAAAGCTGCCGAAAATCAAGGTATGGATTCTTTGAAACAAATCCTGGTTCCATTGAAAAAGCCAGTGCCAAATCAAATTAAGAAGAACACGTTGACGCCTGTCGAAACGACGGATAATTCTAAACGTAACGTAATCAAAACTAGTTTGTCACCCATTTGTGGCATCGATGGTTCTTTACCATGCGATGTTACAAATGTCTCAAAGTCTGAATCAAATTCGCGAAACGAATCGTCGAATAGTAATAATACATCGAAGCAATTAGAAGGCAAAAAAGTGGAGAAAAATAAAGTGTTAATGTACGACAAGTACGCAACGCCACGGATGCAAGGGCAGAAAACAGAAGACGCGCCAATCATCGTGCTATTAACCGGAAACGAAGTACCGAGGATGGAAGATAAAAAGGAAGATGCgcgagaaaaggagaaagaagaggTTGCAGAGGCACGAAATTCGTCTGACGCGGATCAACCGAAAGAAGAGGTAGACGAGCTGATGCAGAATCTGAAAAACAGCTGTCCAATTTGTCAGAAGGTTCTGAAAACCGAGAAATTGATGCAAAGACACGTGCGCGGGATACACCAGAAGACCTTTTGTTGCGACAAGTGCAACAAACGCTACGCGACGAAACAAGGCTTGCAGGAGCATCAAAGAGCTCACGAGGACAACTTTTACTTGGAATGCACTATCTGTCATTTAAGATACAAGCGTAAAGCTGGCCTGAAGTATCATCATATTCGTATGCACAGCAACGTGGAGCCAAAGTACATGTGCGACTACTGCGGCAAGCGTTACAAGTTGAAATTCGAGCTGGGTCTTCACATCGAGAAGACACATTTGAATCCCACCCATATATGCGAGATCTGCGGCAAAGTGGTGAAGAACATGTCGTATCACGAAAGACAGCACGAGTGGGCGGCTAGGAAAGCGCGAAAGCAGTATCGTTGCGATCTTTGCACGAAGGCATTCACGACGCGTAACAATTTGGATAATCACTTGCTGCTGCACAAGGATGGCTTCAAGTGCCACCATTGCGGGGAAGTTTTCTCGTCGCCGCATTCACTCGGCCACCATAAGACGAAGATGCACAAGTCCGGCACACCGTGTACCATTTGCAAGAAAATGTTCTACAACAACAGCAATCTGTATCAACATGTGCTTACACACGAAGGAATCAGACCGTACAGATGTGACATTTGCGGGGAAGATTTCACGCAAAGATCGAGCGTTGTCAGGCATCGGAAAACGCATCCTGGACAGCTTCCTCCTTACACGGAAACTATCACGATCGCGAATCTCGCGAAGCACGTTATGCAAAGACACAAAGAAGAACCTGTCGCAGCACAGCAAAGAAATGCAGACAGAAATTCGTCTTACGATTTAACAGCCGTCGATTCGAAACAACAGAACTATAAaacgcgaagaagaagaagatcgaAACAAATCTCAGCTACAAATTTCGAACACGCAGAGGTAGAACATCCCATGAACGATTCTTTCGAGGAACATAATTCTTCGATCGATTCGAATCACGATACCGAAAACCGTCAAAGCTTCAAAAGGCACCATCCAAAGGGATCGGAATTAGAGCTTCAAATTCTTTCATCGAAATCCGAAATAGTTCACCTGAAAAAAGAATCTGAATCGACCAAGATCAATCGAGCAACGAAGAATGACGAAGTTGAAGTAGACCAAGTTTTGGACAAGATCAGGAACACCTGCCCGTTCTGCGAAAAGCGTTTCGATAACGCGAAGAAGGTTGAAAATCACGTGACTTACGTGCACCGGAAACCTTACAAGTGCGACATGTGCAAAAGAGCCTGTCACACAGCTCGAGCCTTGGAAGAGCACAAGATGATCCATCGCCCGGATTACTTCTTCGAATGCGAGATCTGTCACGTGAAATACAAGAGCGAAGACAGCCTGAAGAGGCACAAAATGCGCATACATAGCGATTACGAATCGAAATACGTGTGCGAGCACTGCGGTCGCAGTTACAAGCTGAAGATCGATCTAACGCATCACATGAAAAGGACTCACATCTCCGAGTTACAAATCTGTCGATTTTGCGGCAAGGGTGTGAAAGACGTGAAAGGGCACGAGTGGAAGCACCAAATACGCAACAAGGAAGTGAAATACGAGCACACGTGCCATTTGTGCCGCAAGAAGTTCCTCCATAGAAGCAGACTGGACAATCATCTGAGATTACACGAAAAAGGGTTCAAGTGTGAAGAGTGCGGAAAAGAGTATCGTGGAACTCGCGAATTAATGAGCCACAAGAGGTTCAAGCACGGACAGGCGAAGATTTCTACGTGCATTTTGTGCCAAAAGGAATTCCCGTCTAGCAGCAATTTTTATCAGCACGTTTTGACGCACGCCGGTATCAGGCCTTATAAATGCGACGTTTGCGAGGAGGATTTCACTCAACGTTCTAGTCTTTTGAGACACAGGAGGCATCATCCTGGGCCGTTGCCACCGTTGCACTCTACGCATCCGCAGATCGCTGAATTAGCTAGGAGTTATTTACAGAAACTACAGAGCGATCAGATTGATAAAAGTTACGTGTTGAACGCGAGATTATGA
- Protein Sequence
- MKLIPVVKRYANSKNRPEIVKNGDVVPNKIVLINDTNSLTNVSSGNVINPALIPNKMSVNNDILLNTLNNTLSCNIIGNINNVGSVVGPCNNNIPLKAAENQGMDSLKQILVPLKKPVPNQIKKNTLTPVETTDNSKRNVIKTSLSPICGIDGSLPCDVTNVSKSESNSRNESSNSNNTSKQLEGKKVEKNKVLMYDKYATPRMQGQKTEDAPIIVLLTGNEVPRMEDKKEDAREKEKEEVAEARNSSDADQPKEEVDELMQNLKNSCPICQKVLKTEKLMQRHVRGIHQKTFCCDKCNKRYATKQGLQEHQRAHEDNFYLECTICHLRYKRKAGLKYHHIRMHSNVEPKYMCDYCGKRYKLKFELGLHIEKTHLNPTHICEICGKVVKNMSYHERQHEWAARKARKQYRCDLCTKAFTTRNNLDNHLLLHKDGFKCHHCGEVFSSPHSLGHHKTKMHKSGTPCTICKKMFYNNSNLYQHVLTHEGIRPYRCDICGEDFTQRSSVVRHRKTHPGQLPPYTETITIANLAKHVMQRHKEEPVAAQQRNADRNSSYDLTAVDSKQQNYKTRRRRRSKQISATNFEHAEVEHPMNDSFEEHNSSIDSNHDTENRQSFKRHHPKGSELELQILSSKSEIVHLKKESESTKINRATKNDEVEVDQVLDKIRNTCPFCEKRFDNAKKVENHVTYVHRKPYKCDMCKRACHTARALEEHKMIHRPDYFFECEICHVKYKSEDSLKRHKMRIHSDYESKYVCEHCGRSYKLKIDLTHHMKRTHISELQICRFCGKGVKDVKGHEWKHQIRNKEVKYEHTCHLCRKKFLHRSRLDNHLRLHEKGFKCEECGKEYRGTRELMSHKRFKHGQAKISTCILCQKEFPSSSNFYQHVLTHAGIRPYKCDVCEEDFTQRSSLLRHRRHHPGPLPPLHSTHPQIAELARSYLQKLQSDQIDKSYVLNARL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -