Epru023159.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Eucera pruinosa
Gene Symbol
-
Assembly
GCA_028830335.1
Location
JAMYCR010000017.1:2299832-2305088[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 9.1 1.1e+03 1.1 1.1 3 21 325 343 323 344 0.84
2 16 0.14 18 6.8 0.3 3 20 371 388 370 390 0.93
3 16 0.022 2.8 9.3 2.7 2 23 429 451 428 451 0.94
4 16 5.4e-05 0.0068 17.6 0.4 1 23 457 479 457 479 0.98
5 16 3.7e-06 0.00047 21.2 3.4 1 23 485 507 485 507 0.96
6 16 0.00017 0.021 16.0 1.9 1 23 516 538 516 538 0.97
7 16 0.00012 0.015 16.5 2.5 1 23 544 566 544 566 0.98
8 16 2e-06 0.00025 22.1 0.5 1 23 571 593 571 593 0.97
9 16 0.043 5.4 8.4 6.1 1 23 600 622 600 622 0.99
10 16 0.0022 0.27 12.5 0.2 2 23 642 663 641 663 0.96
11 16 8.4e-05 0.011 17.0 0.4 2 23 671 693 670 693 0.96
12 16 0.00047 0.06 14.6 0.6 1 23 699 721 699 721 0.96
13 16 0.0013 0.17 13.2 2.3 1 23 727 749 727 749 0.98
14 16 1.4e-07 1.7e-05 25.7 1.2 1 23 755 777 755 777 0.99
15 16 5e-06 0.00063 20.8 0.4 1 23 783 805 783 805 0.97
16 16 0.034 4.3 8.8 0.2 2 23 811 832 810 832 0.95

Sequence Information

Coding Sequence
ATGAGGATAGTTTGCGCCGCGAAGAACTGCAAATATTCTTCGGATAACGCAGACTCCACGCAcgtattgtttattaatttcccGAACGACGACACTTCCAAAATATGGGCCCATCACTGCGGCAGAACCGATCTCTTACTAAAATCCAACGAAGAGTTGCACATGAATTACTATATATGCTCCCATCATATAGAGGATCGATACTACATAAGTAAATCGGATCCGGTTATAATAGATCAGCAAGCAGTTCCAACGTTATTCGAAGCTCGCGCAATTAACGAGAAAGACATCGAGACGAGAAAGATGTTCGAGAGAAACGAACAGCCAGACGAAGCTGACAACGTTGTATTATCGTACTGCGATATGGAAGTCGAGATAGATCAGTATCGCGATATAAGTATCAAACTATCGAATCTGTGCAGAATATGCGGCGAGCCTTCGTTGGATAGCGTAGAAATATTCGCGTCGAAAGGGGCgcaattgaaattgaaagagAAGATCAATTTGCATCTACCGATTTCGATTGACACGAACGATGATCCGTTGCCGCAGAAATTGTGCACGAATTGTTGCAATAAATTAGAGATCGCGCATTCCTTAGTGGTAACCTGCTTGAGAACGGATATCAGGTTGAAAAGGTTTTTGAATATTAACGAAGAACTGAATTATGATCACAGATATAGCGCGATAGCAAAGAAATGCTGCGCCGAAATCACCGAAGAGCTATGTCTTCACGAAACATCCGAAGGTTTATCTTCCGCCAAAGAAGAATCGATTTCAACTAGCCACGAAATCATTTCGAAATTCAATCACCCGTTGAATACTCCTAAAACCAGTAGCaatttcaacgcgttaaaaAGAGATACAGCGTCGTCCGATCTGAGCAACTTAGTCGCGTCCAATAGCGAGAAGAATAAGGAAGACGAATGCGCGaacgaaataacgaaaaatGACTCGAGCAACGAAATTCAATGCGTTTGTTGCAAAGACACGTTCAAGACTCGGGAGATGTTCGAGAATCACAAAATGCTGTGCGACGACGAGGAAACGATGCACAAAGAGAAGGATAACAACGACAAGCAGTGCAACTTTGAATATCTCGcaagaatttgcaacgtttgttACACAGAGTTCGAGAGCGAGAAACATTTGGCGGAGCACAAATCGTCTTGCTACAAATTCGTCCAAGAATATTACGCGCCCGAGAAAACGAATACCGGTAAAGAGTTGTGCAACGTTTACAAGGATCATCCTAATAACGTTCAACCACTGGAAGGTAACAAGAGATGCGGCCATTGCGATTTGATTTGCGGGACGAAGAAAGAACTGCTTAATCACATGATCGAACGCCACGATGGCCAGTTTCTGTTTAAATGCACGATGTGCGATAGGAGTTACGAGAAATGGTCAAGCTTAGATGTCCACGAAGCCACTCATAGAGTGGATAAACCTTATCTGTGCGATCTGTGTGGGAAAAGCTTTAAACATTCGAATAATCTGAGGGGGCACAAGAGGACCCATTTGGACGATTCGAGGAAGAAACGGCACGTGTGCGATATTTGCGGGAACGCGTTCAGATCTAGATTTCATTTGGGGGAACACATGAACCAGCACAACGGGAATAAGCCTTACTCTTGCGAGAAGTGCAACAAGGCATTTTATAAGAGGATACAATTAAGGCAGCATAAATTGTCGCACGGTTTGAATAAACACGTCTGTCCTATATGCGGGGCAGCGTTCAATCGCAAAGGGAACATGAATACGCATCTTAAGCGACACAACAACGGAGATGGCACGTACACCTGtagtGTATGCGCTCACAGATGTAAATCGATGAGCGAGTTAAAGTTGCACAGGAAAAAGCACACGGAGCAGGACATCGTGGAAAGTATCCGTAAAAATTGCCTGGATAAAACGATATGGCGATGCGGCAGTTGCAATCGGATATTTTCCACCCGCGCCGTGTTATTAAATCACGAGCGTATTCATAAAGGTGAACGCGCCGGTATCGAGTGCAATATTTGCGGGAAAACGTTGGCCAGCAAAAATTCCTTGACCTATCACACGAAATCTATGCATTCCACCGAGCGGCCGCACATGTGTCAATACTGCGGGGAATCGTTCGTTTCGAAGGAAGCGCGATTGATACACGAAAGGATACACACCGGCGAGCGGCCTTACGTTTGCAAGATTTGCAACACGGAGTACAAGTGTTCCAGCAATCTTAATCAGCACGCGAAGATCCATTCCGGCGTTAAACCGTACAAGTGCAATTATTGCAGCAAAAGTTTCACCAGGAAAGGAGCGTTGAACGTTCACGAGAGGATTCACACGGGAGAGAGGCCATTCGCGTGTGCAATTTGCGGGCGAACGTTCGCGCAAAAGAACGACATGATCAAGCATACGAAGACGCACGACGCGAAATCGTTGCGCTGCGAACAGTGCGACGAGGCATTCTTAAGGAAGAAGGATATATTGAAGCATATCGCTTTGCACGAACAGAATAATCCTGTTGTACAAGAATACGTGGAGGTGCAACAGGAAATCGCGCCTTATAACGTGGATATTCCCTGCTCGCAATTCGAGTAA
Protein Sequence
MRIVCAAKNCKYSSDNADSTHVLFINFPNDDTSKIWAHHCGRTDLLLKSNEELHMNYYICSHHIEDRYYISKSDPVIIDQQAVPTLFEARAINEKDIETRKMFERNEQPDEADNVVLSYCDMEVEIDQYRDISIKLSNLCRICGEPSLDSVEIFASKGAQLKLKEKINLHLPISIDTNDDPLPQKLCTNCCNKLEIAHSLVVTCLRTDIRLKRFLNINEELNYDHRYSAIAKKCCAEITEELCLHETSEGLSSAKEESISTSHEIISKFNHPLNTPKTSSNFNALKRDTASSDLSNLVASNSEKNKEDECANEITKNDSSNEIQCVCCKDTFKTREMFENHKMLCDDEETMHKEKDNNDKQCNFEYLARICNVCYTEFESEKHLAEHKSSCYKFVQEYYAPEKTNTGKELCNVYKDHPNNVQPLEGNKRCGHCDLICGTKKELLNHMIERHDGQFLFKCTMCDRSYEKWSSLDVHEATHRVDKPYLCDLCGKSFKHSNNLRGHKRTHLDDSRKKRHVCDICGNAFRSRFHLGEHMNQHNGNKPYSCEKCNKAFYKRIQLRQHKLSHGLNKHVCPICGAAFNRKGNMNTHLKRHNNGDGTYTCSVCAHRCKSMSELKLHRKKHTEQDIVESIRKNCLDKTIWRCGSCNRIFSTRAVLLNHERIHKGERAGIECNICGKTLASKNSLTYHTKSMHSTERPHMCQYCGESFVSKEARLIHERIHTGERPYVCKICNTEYKCSSNLNQHAKIHSGVKPYKCNYCSKSFTRKGALNVHERIHTGERPFACAICGRTFAQKNDMIKHTKTHDAKSLRCEQCDEAFLRKKDILKHIALHEQNNPVVQEYVEVQQEIAPYNVDIPCSQFE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-