Epru025959.1
Basic Information
- Insect
- Eucera pruinosa
- Gene Symbol
- -
- Assembly
- GCA_028830335.1
- Location
- JAMYCR010000021.1:4309957-4317636[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.35 44 5.6 0.9 1 23 303 325 303 325 0.91 2 12 3.7e-06 0.00047 21.2 0.7 1 23 330 353 330 353 0.96 3 12 0.43 54 5.3 2.1 2 23 419 441 418 441 0.88 4 12 1.9e-06 0.00024 22.1 0.2 1 23 447 469 447 469 0.98 5 12 0.0034 0.43 11.9 0.1 1 23 478 501 478 501 0.89 6 12 2.6e-07 3.3e-05 24.9 3.6 1 23 507 529 507 529 0.98 7 12 3e-06 0.00037 21.6 1.0 1 23 535 557 535 557 0.98 8 12 3.6e-05 0.0045 18.1 2.0 1 23 563 585 563 585 0.97 9 12 1.5e-08 1.9e-06 28.8 1.8 1 23 591 613 591 613 0.99 10 12 1.2e-05 0.0016 19.6 5.7 1 23 619 641 619 641 0.98 11 12 1.2e-05 0.0016 19.6 1.6 1 23 675 697 675 697 0.98 12 12 2.8e-07 3.5e-05 24.8 1.5 1 23 703 725 703 725 0.98
Sequence Information
- Coding Sequence
- ATGGCAGAAGTACGGCTTTACGACTCGACGATTTGCCGATTATGTGCGGAAGACAACGGGAACGGAGAGTTGCTCTACACAGGCGACGGCGACGATCCGGATTTAAGCTCCATGGTGAATCGCTACTTGCCGCTCAAGATCAGAGACGATGGAAAGCTGCCGCGCACCATTTGCCCCGGCTGCAATATTCAGCTGGAATCTACCATACAGTTCTTCGAATTGCTGGTGGACGGACAGAGGAAGATTCGCGAGATGTGGAAGCATCAGGTGGAGCAGTTGCGGAGAGCCGAAAGAGAGCGCGTTCGCGCGGAAAAGGATAACGTGGAAACTAGAATGGAACCGGCCGAGTTGGACGATGGCCCCAGATACAACGACGAAGATCAATTCGAGCAGcagattataataaaaaTAATGCCGGATGGCTCGATGTACGCCGCGGAGCACGAGATGAGCTTGCAAATGGAGGGGCTGAGTAAACCGAAGCGAAAAAGAGGACGTCCTCCGAAGTCGCACATGGAAAATATATCTATGGAATTATCGAAAGGAGAGATACTGGAAGCAGTTAGTCAAGAGGAGGAAGACAAGCAAGAGGAAGAAACGGACGACATAGACGGGGACGGAAGGCGTCGTAGGAAACGGAAAGTTCCGAAAAGATACATGGAGGCGGTTCAGGGCAAGGAGCTAGAGAGAATatacaaagaggagggggtgatAGACGAAGAGGAAGACGACGAGCCAGATACTTTCGAAGATTCCGAGGAGCAGGTGAACGTGACCGTTCCCGACAGCCAAAAAGAAATAATCGGTCACCTGGAATCGGAGGAGGGAAAGGATCTGGGGGAATTGGTGATAGTGAATCGAGGCAGAGGACGAGGCAGGCCAAAGTTGCGCCGCAGAAGGAACAAATTCATATGCCAGTTGTGCGGTCGAGGCTTTCTTCAACGTAGCAGATACATCGTGCACAAGAGCTTCCACAAAGGCATAAAATACGAATGCTCCGACTGCAAGAAATTGTTCACGAGCAAAGAGAATCTGGAGGTGCATCAGAAGGCGAGTCATCCGATCGTGGATTCGGTTAATCAGAGTTTCGAGCATCATCGCGGCAGCATCGTTGAAGATTCCAGCCTCGAGTCGAAGCGACGTTTATCCGAGGAAGATAGCAGCGGTATCACGAACGCGCTGGAGCAGGCTTTCACCGAGGAGCACGCCGCCAAGTTTCCCAACAATTCCGTCGTCGACGCACCGAAACCTATTCCCTGCCAACACTGCGACAAGTTGTTCGAAACGAAGGAAAGCCACGAGTTGCATTCGAAGATGGTCCACGAGCAGGAGAAATTATTCGTTTGCCCTATTTGCAGTAAAAGTTTCTTTCAGCAGGCGGCTCTAAAGAGTCACATCTCGATACACGAGAGAAGCAAACTGGAGAAAGAGTATCCGTGCGACATTTGCGGGAAAGTGTTGAATCATCCGAGCTCGGTGGTGTATCACAAAGAAGCGGAGCACAACAATGGCCGGCGATTCGTTTGCAACAAGTGCGGGAAAAGTTTCAAGCACAAACAGCTGCTGCAACGTCATCAGCTGGTCCATTCGGACGATCGGCCGTACGTCTGCAAGTCGTGCAACGCGAGCTTTAAAACGAAAGCTAATTTGATCAACCACCAGTCGACGCACACCGGCGAGAAGAAATACTTCTGCGAAATCTGCGGTCAACAGTTTGCCCATAAAACTAGTCTCACCCTCCATTACAGGTGGCACACGGGTCACAAGCCGTACACGTGCGAGGTGTGTCACAAGAGTTTCTCGCAAAACGGCAACTTGCAAGAGCACATGCGGATACACACCGGAGAGAAGCCTTACTGTTGCGACTATTGCGGCAGAAAGTTCACCACCTCCTCGCAGTTCAAGTTGCACGTTAAAAGGCACACCGGCGAGCGGCCGTGGAAGTGCGAATTTTGCGCAAAGTGTTTCCTGCACAAGGACACTTGGAAGTGTCACGTGCGCAGGCACAAAGGGGAGCGTCCTTTCCAGTGCGCTCATTGCAATCGAGGATTCACCGAGCAGTGGGCCTTGAAGAAGCATCTTCGCCTCCACACCGGCGAGAAACCGTACTCGTGCGACGTCTGTGGGAAAGCATTCGCCGACTGTTCGAACCTAACGAAGCACAAGAAAGTGCACAGAGAAATCAAGCTGTCGGCGATAACCGAAATAGAAGGATCCCCGATCGGTGAGGTTTGGCAAATTTTGCCAAGCTCGCAAGAATCGGACGAACACTCGTTGACCGATCAAATGGCTCAAGTGATCGCCACCGATGACGCGTCCGGAGACGGTATTCAACAAATCATATACGTCTCCTACCAGGATCCGGACGATCCTAATCAGTCGAGGACTTTGCATTTCGTGGATGCCGGCATGATAAGAAACAAAGAGGAGAAGACGAACGCGAATCAGTCGCTGTCGCATTTAAACGTGGCGAACGATGGAATGCTGTCGAATGCGACTCACGCGGCTGCAAACAACCCAACGAACGGCCGAATAAACGTGGACCTTTCTGAATCGGACCTTCAACTTCAGATCACGGACGAAGAAGGTAATCCGATTCCTCTTTCGATTCAAGATGCTCGACAGCTTTTGTCTCAGAGCCAATTCGTGAACCAGCTGAGCGACGGCCAAGAGATTCGAGTTCACCCGGCGGTGATTCCGGACGAATTGGCGACGCCGTTAAACGTGCACGTTAATCAGAGTTCAAGCATGAAGGATGTTAATATCTCGAGCTCGGAAGAGACTAAAGTGAAGAATATCTCCAGCGTACAGTCCGACGCAGAAGCGATTGTGAAAGCGTTAGAGGACGAAGACACGGACGCGAACGCGGTAGCGACGATCAATCAGATGGAGGAATCGGAACAGTCGGGGATCGCGGAGAACGAACAAGCGATAGAGTTCACCACGCAGGATGGGCAGAAGCTACGATTAGTCACTTCCTATCACGTTGATCCGATGCAACTTGCTTCCGAGTACCTGACTATTGTATAA
- Protein Sequence
- MAEVRLYDSTICRLCAEDNGNGELLYTGDGDDPDLSSMVNRYLPLKIRDDGKLPRTICPGCNIQLESTIQFFELLVDGQRKIREMWKHQVEQLRRAERERVRAEKDNVETRMEPAELDDGPRYNDEDQFEQQIIIKIMPDGSMYAAEHEMSLQMEGLSKPKRKRGRPPKSHMENISMELSKGEILEAVSQEEEDKQEEETDDIDGDGRRRRKRKVPKRYMEAVQGKELERIYKEEGVIDEEEDDEPDTFEDSEEQVNVTVPDSQKEIIGHLESEEGKDLGELVIVNRGRGRGRPKLRRRRNKFICQLCGRGFLQRSRYIVHKSFHKGIKYECSDCKKLFTSKENLEVHQKASHPIVDSVNQSFEHHRGSIVEDSSLESKRRLSEEDSSGITNALEQAFTEEHAAKFPNNSVVDAPKPIPCQHCDKLFETKESHELHSKMVHEQEKLFVCPICSKSFFQQAALKSHISIHERSKLEKEYPCDICGKVLNHPSSVVYHKEAEHNNGRRFVCNKCGKSFKHKQLLQRHQLVHSDDRPYVCKSCNASFKTKANLINHQSTHTGEKKYFCEICGQQFAHKTSLTLHYRWHTGHKPYTCEVCHKSFSQNGNLQEHMRIHTGEKPYCCDYCGRKFTTSSQFKLHVKRHTGERPWKCEFCAKCFLHKDTWKCHVRRHKGERPFQCAHCNRGFTEQWALKKHLRLHTGEKPYSCDVCGKAFADCSNLTKHKKVHREIKLSAITEIEGSPIGEVWQILPSSQESDEHSLTDQMAQVIATDDASGDGIQQIIYVSYQDPDDPNQSRTLHFVDAGMIRNKEEKTNANQSLSHLNVANDGMLSNATHAAANNPTNGRINVDLSESDLQLQITDEEGNPIPLSIQDARQLLSQSQFVNQLSDGQEIRVHPAVIPDELATPLNVHVNQSSSMKDVNISSSEETKVKNISSVQSDAEAIVKALEDEDTDANAVATINQMEESEQSGIAENEQAIEFTTQDGQKLRLVTSYHVDPMQLASEYLTIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00361071;
- 90% Identity
- -
- 80% Identity
- -