Epru008827.1
Basic Information
- Insect
- Eucera pruinosa
- Gene Symbol
- -
- Assembly
- GCA_028830335.1
- Location
- JAMYCR010000005.1:17726636-17734330[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.38 48 5.5 0.0 2 23 43 64 42 64 0.96 2 17 0.00027 0.034 15.4 1.3 2 23 77 98 76 98 0.95 3 17 0.032 4 8.9 0.2 6 23 109 126 109 126 0.98 4 17 1.3e-05 0.0016 19.5 0.1 1 23 130 152 130 152 0.98 5 17 0.00011 0.014 16.6 0.6 1 23 158 180 158 180 0.97 6 17 9.6e-05 0.012 16.8 5.4 1 23 191 213 191 213 0.97 7 17 5.4e-06 0.00069 20.7 0.1 1 23 222 244 222 244 0.98 8 17 0.52 66 5.0 2.5 3 13 252 262 251 264 0.89 9 17 3.3e-05 0.0041 18.3 0.6 2 23 353 375 352 375 0.95 10 17 0.00014 0.017 16.3 5.4 1 23 381 403 381 403 0.98 11 17 0.048 6 8.3 0.4 1 23 407 429 407 429 0.97 12 17 1e-05 0.0013 19.8 1.2 3 23 437 457 435 457 0.96 13 17 4e-06 0.00051 21.1 0.5 1 23 463 485 463 485 0.98 14 17 0.017 2.1 9.7 0.7 1 23 491 513 491 513 0.98 15 17 1.7e-07 2.2e-05 25.4 0.3 2 23 520 541 519 541 0.97 16 17 1.3e-05 0.0016 19.5 1.5 1 23 547 569 547 569 0.97 17 17 2.9e-07 3.6e-05 24.7 1.7 1 23 575 597 575 597 0.98
Sequence Information
- Coding Sequence
- ATGCTACCTCAGGATCAACAAGAATGCGGCCCGAACGAGATATTCGAAGAAGACACGGACCTTATCATCACAGATCGCATGCCGAAAGTGGAGAACGCAGAAATAGTGATCTCCGATGATATCGTGCAGTGCAATCTGTGCGGAGATAGTATCGATTCGGAGCAAGCTCTCGCTCTGCACATAAAACTGCACGAACAGGAAGAAGTACAGTTGCAAGATAATCATCTCGTATGCGAGCACTGTGGTTGCAGCTTCGCATCGATATCCTCTTTTGAGGAGCACCAACTCGAACACGAAATGGACGAAAGTCAATCATCCGAACCGTGCGATTACGTCACCACGCATAGAGACGACTTGATAATACATCAAAAGGGTCACAATATAGAATACGAATGCGAGATATGCGGTGCAAATTTCGATACTTCTAGCAGCTACGAGGAACACCAATCGATGCATTCGCACGACAAGCCATTTCAATGCGAGATCTGTAACGCCACGTTTCGTTATCGTCAAGGTTTAAGATTGCACGCGAAGCTACATCAGCCAGATTACGTTCCGCCTCAACGAAAGCATCACTGCGAACTTTGCAACAAACGTTTCTCCCGAAAGCAGGTGTTACTGGTTCACATGAAGACCCACGGAAACGTTGGGCCACAAAATGAATACATTTGCCCTGTTTGTAGCAAGGCAGTGTCCAGTAAGACTTACTTGACTATTCATATTAGGATACATACGGGCGAGAAGCCGGAGATCTGTGAATTTTGCGGGAAAGCGTTTAGCTCGAGGAAGTGCCAGGAATTCGACGAGGAAGCGAAAATAGAGTCGATAGAAACGCTAGAGGAAATGGAATTGGTCAAATACGAGACTGATGTTTGCACAGTGGAAGAGTTCGAACAGATCAGCCATCAGGAAGTGGTAACCCAAACTTTATACGAGTCCGATGACGCGGAAATAAAACTGGTTCTGGAAGAGGAAAGGGGTGACAAAAAGGTGTACAGGAAATTTCAATATATGAAACACAGGCAGCACGGAAGGAACAGCGATGAAAGTAGAACTCGCTGCGATGAATGCGACAAAACCTTCGCGAACGTGCAAAAGTTAAAGAAGCACGTCATCAAAGTACACCAACAGGAGAAACCTTATCAATGCATGCTCTGTAACAAATGTTTCAAGACAGAAGAGTTCCTGAAGACGCATTTGAAGCAGCACAACAAACGTTTCAGCTGCGACATTTGCGGCATCTCGAAGGTTTCCGGTTACGATCTTCGCCTGCACAAGAAGAAGCACAACGGGGAATACGTGACCCATTGCGAGATTTGCGGTAAAGGTTTTTATACGAATCAGACATTAGAAAGGCACTTAGTCACCCATACCGGCGAGAAACCGTTCATTTGCAAGGTATGCAACACATCTTACGCGAGCGCTTCTTACTTGAACTTGCACATGAAGTCCCACGGTGAACGCGAGAAATTCAagtgcaacgtttgcaatttcgaGAGCTATTGGAAGACGGCGCTGAAGGTGCACATGAAGATACACACAGGGGAGAATCTGAGCACCTGCGAGGTTTGTGGCAAGTCCGTGTCCAGCAAGTCGTATTTGCAGGTTCACATGCGCATACATTCGGGCGAGAAGCCGCACATCTGCGAGGTATGCGGCAAAGCGTTTAGTATTCACAAGTATCTGATCGTACATTTGAGAACGCATACGGGCGAAAGACCGTACGAGTGCAAGGTATGCCAAAAGAGGTTCACGCAGCAGGGCACGTTGAACTCGCACATGAAGCTGCATAACGAAAGAAAATGA
- Protein Sequence
- MLPQDQQECGPNEIFEEDTDLIITDRMPKVENAEIVISDDIVQCNLCGDSIDSEQALALHIKLHEQEEVQLQDNHLVCEHCGCSFASISSFEEHQLEHEMDESQSSEPCDYVTTHRDDLIIHQKGHNIEYECEICGANFDTSSSYEEHQSMHSHDKPFQCEICNATFRYRQGLRLHAKLHQPDYVPPQRKHHCELCNKRFSRKQVLLVHMKTHGNVGPQNEYICPVCSKAVSSKTYLTIHIRIHTGEKPEICEFCGKAFSSRKCQEFDEEAKIESIETLEEMELVKYETDVCTVEEFEQISHQEVVTQTLYESDDAEIKLVLEEERGDKKVYRKFQYMKHRQHGRNSDESRTRCDECDKTFANVQKLKKHVIKVHQQEKPYQCMLCNKCFKTEEFLKTHLKQHNKRFSCDICGISKVSGYDLRLHKKKHNGEYVTHCEICGKGFYTNQTLERHLVTHTGEKPFICKVCNTSYASASYLNLHMKSHGEREKFKCNVCNFESYWKTALKVHMKIHTGENLSTCEVCGKSVSSKSYLQVHMRIHSGEKPHICEVCGKAFSIHKYLIVHLRTHTGERPYECKVCQKRFTQQGTLNSHMKLHNERK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -