Basic Information

Insect: Eucera pruinosa
Gene Symbol: gtf3a
Assembly: GCA_028830335.1
Location: JAMYCR010000005.1:17740458-17745150[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 6.2e-06 0.00078 20.5 0.5 2 23 87 108 86 108 0.97

2 18 5.7e-07 7.2e-05 23.8 1.1 1 23 114 136 114 136 0.98

3 18 0.0067 0.85 11.0 0.2 3 23 143 164 142 164 0.97

4 18 8.6e-05 0.011 16.9 1.7 1 23 170 192 170 192 0.97

5 18 0.013 1.7 10.0 0.2 1 23 198 221 198 221 0.97

6 18 2.8e-06 0.00036 21.6 0.3 1 23 231 253 231 253 0.96

7 18 0.0015 0.19 13.0 0.4 1 23 257 280 257 280 0.92

8 18 1.2e-05 0.0016 19.6 2.1 1 23 286 308 286 308 0.99

9 18 7.6e-05 0.0096 17.1 0.2 2 23 608 630 608 630 0.95

10 18 0.0045 0.57 11.5 4.8 1 23 634 656 634 656 0.99

11 18 0.21 27 6.3 3.7 1 23 662 685 662 685 0.96

12 18 4.9e-06 0.00063 20.8 0.4 1 23 692 715 692 715 0.93

13 18 0.00021 0.027 15.7 0.6 1 23 753 776 753 776 0.95

14 18 0.77 98 4.5 0.2 5 20 791 806 790 808 0.90

15 18 4.5e-06 0.00057 21.0 0.2 2 23 817 838 816 838 0.95

16 18 6.1e-07 7.7e-05 23.7 7.2 1 23 842 864 842 864 0.96

17 18 0.00012 0.015 16.5 0.7 1 23 870 892 870 892 0.96

18 18 3.8e-06 0.00048 21.2 1.1 1 23 898 921 898 921 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	6.2e-06	0.00078	20.5	0.5	2	23	87	108	86	108	0.97
2	18	5.7e-07	7.2e-05	23.8	1.1	1	23	114	136	114	136	0.98
3	18	0.0067	0.85	11.0	0.2	3	23	143	164	142	164	0.97
4	18	8.6e-05	0.011	16.9	1.7	1	23	170	192	170	192	0.97
5	18	0.013	1.7	10.0	0.2	1	23	198	221	198	221	0.97
6	18	2.8e-06	0.00036	21.6	0.3	1	23	231	253	231	253	0.96
7	18	0.0015	0.19	13.0	0.4	1	23	257	280	257	280	0.92
8	18	1.2e-05	0.0016	19.6	2.1	1	23	286	308	286	308	0.99
9	18	7.6e-05	0.0096	17.1	0.2	2	23	608	630	608	630	0.95
10	18	0.0045	0.57	11.5	4.8	1	23	634	656	634	656	0.99
11	18	0.21	27	6.3	3.7	1	23	662	685	662	685	0.96
12	18	4.9e-06	0.00063	20.8	0.4	1	23	692	715	692	715	0.93
13	18	0.00021	0.027	15.7	0.6	1	23	753	776	753	776	0.95
14	18	0.77	98	4.5	0.2	5	20	791	806	790	808	0.90
15	18	4.5e-06	0.00057	21.0	0.2	2	23	817	838	816	838	0.95
16	18	6.1e-07	7.7e-05	23.7	7.2	1	23	842	864	842	864	0.96
17	18	0.00012	0.015	16.5	0.7	1	23	870	892	870	892	0.96
18	18	3.8e-06	0.00048	21.2	1.1	1	23	898	921	898	921	0.98

Sequence Information

Coding Sequence: ATGCATGGAATAGTTGCGACCAACGTGGAAGGATTGAAGGAGCGTACGAAATTGCTCAAACGAATCATTTTAGCTCTCAAGACCATAAAGGATGCGAAACCCAAAGGGCCGGCCATCAAGATCTTCACACCAGAAGAAGTAAACTCGTTATTCGACAAAATGAAGAAGACCAATAACGATTCTGCTAAAAATCCACCAAAAAAACGTGTGAGGAAGAGAAATAGACCTAAAAAAGTTAAAGAACCGAAAAAACTGTCCGTCTGCGAAACGTGTAACTTGAGTTTCGTCAGACCGAGCGCTTACAAACGCCACATGCTCAAGCATAGCGATCTGCGGCCGTTCAAATGCGACGTTTGCGACAAGGCGTTCAAAACTAACGACACGCTGAACAATCACAAGCAAATCCATCAGGAAATCGAGCGAGCTTGCGAATTGTGCGGGTTCACCACTTTTAACAAGATCTCCCTGGCGTTGCACATTCGGCGAATACATCAACGCGACTTCCGTTACCGTTGCGACCAGTGTGATAAGGGTTTCATGTCCAACCACGACCTGCAGGACCACAAGGCCAGTCATTCCGGTAAGAAGACATTCGTATGCGAAACTTGTGGCAACGCATTCTGGATGAGGTCCGCCTTGATGACCCACAAACGTAAAGTTCACAGAATTCTGCAGCGTGCACCAAAGCAGTTTCAGTGTAACGATTGCACGAAAAGTTTCGACAACAAAGACGATCTTATCAGCCACGTCGGTGTGCACTCGCAAACGTTTCTCTGTGCTCAGTGCGGCAAGAAATTTGCGACCATTTACGGCCTGCAGATGCATACAACGTCGATGCATATGGGGCAGAGACCGTATAAGTGTGATCTGTGTGAACAGAGCTTTACCCAGAGGAGCGCTATGATGACGCACCGTCGCAAACATCCCGGAAGACATCCTCGGCCTCCTCCTACGTTTCTCAGAGATTATGTAAACGGTTTGGTGGcgattaaaaaGAGGTCAACGATCGCAGGAACTCTTCCGGACCAGGATACAAATGTTCGAGTGCCGTCGTTCCAGGTTAATGTTCCTGCTTCCAGTACGCCTGTACAGGATCTTGTGCCGTGTAAACTCGAAATGGAGTGTGAGGAAGATTGCAGTGAATCGATAACATCGGATCCCAGTGAAACTATCCATAATTGCCCTTCGCAGAGTGCAATGATCGAGAATACAATGGTAGAAGCTATGAAGACCGTTTTGGTACCAGTTAGAGATCCCATAACGAAACAAGTTCAAACTATGTTGGTGCCCGTTGAAACGAGGGACGATTCTGGTTTGAATATAATCAAAAGTATCCTAATGCCGGTTTACGGGAGGGACGGATCAGTGGCTTACGACGTGAAAAAGGTCGTGGTACCTATACAACCGCGATTAAATTTGTATCATCAGGAAGTGCCAGTTTTCAATACAGTGTTGTACAAAAACAAAGTGAATCAAGGGTATTGTGAAAATCGGATAGAACAGAAGAGGCTAGAAATGAGGGTGCAAGAGGAGGCGATCAAGAAACGAGAGGAGCTGGAGCGAAGAGATCTGGAAAAAAGATTGTGGGACGAAATAAAAAGGGTTGAAGAAGTGAGAAAAGTAGAAGCAGCAAGAATAGAAGAAACAAGGCAACAAGCTGAAGAAGCGAGAAAAGTTGAGGAAGTTAAGAGAGCTAAGAATGTTGGGCCAATTCGGATAGCTGAGATAGTTGGAAAAGCAACGGCGGAAAGTGCAGCAACAGAAGGTGCAACAGATGCATCTAACGATGAAGATTTTCGCATATTGGACGCGATACGAAACGTTTGTCCCCTCTGTCAGAGGTCTTTCAAAGATGAGGGATACATGCGCAGGCACGTACGTCTGATCCACAAGAAGCCATTCAAATGCAAGAAGTGTCACAAAGGCTACTTCACTGACTTCGCTCTGGAGGAACATCAAAAGAAACACGAAGTGGTTTCCTTCCATCAGTGTTCCGTCTGCCAGATGCACTACAAAACTGTGCTCGGTCTGAAGAACCATAAGCTTCGCGAGCACAGCAAATTGGAGCCTAAATACACGTGCGACTACTGCGGGAAACAGTTCAAAATAAAAGTGAATCTGAAGAACCACATCGACGGAGTACACCTGAATCCTCCTATCGTCTGCAGATACTGCGGCGTGTCGGTGAAGCACATCCAGAGCCACGAGTTGAAGCACGAGCTCGAGAAAGATAACTCTAAGGAACCGATCCCCCAGTTCCCTTGCGCTCTCTGTTCCCGAAAGTACAAAACGTGGAACACGTTGGAGAACCATATGCTGTTGAAGCACAACGACACAACGTCGAATCATGAGCCCGGTATGTTGAGAACGCTTTGCGAGAAGAAATTCCCGTCCAGCAAAGATTTTTATCAACACGTGTTCAAGAAACCGGATCAGTCGAATCTGCTTAGGTGTAACATTTGCGACAGGGTTTTCGCCACCGAGTACAATCTTCGCAATCACGCTTCCGTGCACGCGCAGTCCTTTCTGTGCTCCCATTGCGGCAAGAGTTTCACGCATAACTATTCGTTGAAGCAGCATATGCGCAAGCATACCGGCGAAAAGCCGTACAAATGCAAAGTTTGCTTGAAATCGTTCACCTCGGGCTCCTCCCTTAACGTGCACGCTTTCATCCATACAGGGGAAAGGCCGTACGTTTGTGACGTTTGCGGTCAGAAGTTCACTCAGAGGAGCAGCATGATGGTTCATCGTCGCAAGCAACACGGAaatcttcctcctcctcctccacttGTACGCAGCAAACTACAAAACAACGAACATTAA
Protein Sequence: MHGIVATNVEGLKERTKLLKRIILALKTIKDAKPKGPAIKIFTPEEVNSLFDKMKKTNNDSAKNPPKKRVRKRNRPKKVKEPKKLSVCETCNLSFVRPSAYKRHMLKHSDLRPFKCDVCDKAFKTNDTLNNHKQIHQEIERACELCGFTTFNKISLALHIRRIHQRDFRYRCDQCDKGFMSNHDLQDHKASHSGKKTFVCETCGNAFWMRSALMTHKRKVHRILQRAPKQFQCNDCTKSFDNKDDLISHVGVHSQTFLCAQCGKKFATIYGLQMHTTSMHMGQRPYKCDLCEQSFTQRSAMMTHRRKHPGRHPRPPPTFLRDYVNGLVAIKKRSTIAGTLPDQDTNVRVPSFQVNVPASSTPVQDLVPCKLEMECEEDCSESITSDPSETIHNCPSQSAMIENTMVEAMKTVLVPVRDPITKQVQTMLVPVETRDDSGLNIIKSILMPVYGRDGSVAYDVKKVVVPIQPRLNLYHQEVPVFNTVLYKNKVNQGYCENRIEQKRLEMRVQEEAIKKREELERRDLEKRLWDEIKRVEEVRKVEAARIEETRQQAEEARKVEEVKRAKNVGPIRIAEIVGKATAESAATEGATDASNDEDFRILDAIRNVCPLCQRSFKDEGYMRRHVRLIHKKPFKCKKCHKGYFTDFALEEHQKKHEVVSFHQCSVCQMHYKTVLGLKNHKLREHSKLEPKYTCDYCGKQFKIKVNLKNHIDGVHLNPPIVCRYCGVSVKHIQSHELKHELEKDNSKEPIPQFPCALCSRKYKTWNTLENHMLLKHNDTTSNHEPGMLRTLCEKKFPSSKDFYQHVFKKPDQSNLLRCNICDRVFATEYNLRNHASVHAQSFLCSHCGKSFTHNYSLKQHMRKHTGEKPYKCKVCLKSFTSGSSLNVHAFIHTGERPYVCDVCGQKFTQRSSMMVHRRKQHGNLPPPPPLVRSKLQNNEH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -