Basic Information

Insect: Eubasilissa splendida
Gene Symbol: Prdm1
Assembly: GCA_031772225.1
Location: CM062845.1:37622172-37629435[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 4.5e-05 0.0037 18.6 2.5 1 23 802 824 802 824 0.99

2 5 1.4e-05 0.0011 20.3 5.1 1 23 830 852 830 852 0.98

3 5 2.8e-06 0.00023 22.4 4.3 1 23 858 880 858 880 0.98

4 5 0.092 7.6 8.2 3.1 1 23 886 908 886 908 0.97

5 5 0.00016 0.013 16.9 0.1 1 22 914 935 914 935 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	4.5e-05	0.0037	18.6	2.5	1	23	802	824	802	824	0.99
2	5	1.4e-05	0.0011	20.3	5.1	1	23	830	852	830	852	0.98
3	5	2.8e-06	0.00023	22.4	4.3	1	23	858	880	858	880	0.98
4	5	0.092	7.6	8.2	3.1	1	23	886	908	886	908	0.97
5	5	0.00016	0.013	16.9	0.1	1	22	914	935	914	935	0.96

Sequence Information

Coding Sequence: atgtccGACTGCTTTCCCGAAGTGTCCCTGTGGACAAAGCGGGACTGGCCGCTCATTGGCCGGCGGTGGCATGACTCCAACATGGACCGCAGCCAGCAGCAGCAGGTGGAGCACGAAGCGTGCACGCTGCGCGAGGAGGACTACGAGCGCTTGGCCGTGTACATCGTGCCCGACGTGCCGTGCGCCCCCGGCACGAAGGAGCGCGCCGAGAAGACGCTGCCCAGGAGTCTGACCCTGAAGCCATCGGTGGTGCTGTCCACGCCCAACACTCCGACCGAAGGCGTTTGGAGTGCCGGCGTTATACCGAAAGGCACGAGGTTCGGACCCTTCGAAGGTACTAGAACGCCTAATTCTCCTGACAACAAAGTATCATGGAGGTACTATTGGAGGGTGCAGGAAACTGTAAGACACCACACATACGGAAATATAAAGATATTTAAAGACAACGACTATTACTACTTGGATGGGTCAGACACGAGCATGGCCAACTGGATGCGCTACGTCGCTTCTGCTTACTCATTCACCGTCATGAACTTAGCTGCCTGCCAACACGGGGAGCACATTTACTTCTATACTATCAGAGATATTATGCCGAATGAAGAATTAATGGTTTGGTACTGCAAGGATTTTGCGACGAGACTCGGGTACGATGTAGATCCAGAGAGAGCCACGTATTCTATCTgTAAAGAAGAAACCATCAAAAAAGCATATGGACTACCACCGGCGCCCGTTCACCCCGAGATAGCCTTCAACCACATGAAGTATGTTTTGGGCCTCTCCAATCCCAAAGACCTACTGAGGGCTGACTCTCCGGCGACTGCGCGACCTCCGACTCCTCCCGCCGACCCCGGTGTGCCGACCTCCGCGTCATCACAACCAGTGAGGGTCATCAGTCGACGCTCTCCTCCGGCCCAAAGGCATCCGTCACCGGTAGTGGCATATAAAACCGAGCAATCTGTCATGATAGTGGATCGACGGGAATCTACTGCTAGCGTCATACATCCCAGGCAAGAATCTCCTCACAGAATCCACCACCGAGAGAATTCTACGATAATTGTGCCACAGCAGAAGAATAGTCCTTCGCACGGCGTCCGGGTCGGAGGTCCTCCGAGATCTCCCTCAGCTCCCGCACCCGCCCCTTACGATCACCACCTGCTGGCGACCGCAGACGGATCGGTCCGCTCCGATGAAGGCTATCACAGTAACGGATACCACGATGACGGTTTCACCCCTCCGGAAGATTCGAGCGACTCCGATTCAGAAAACAACTATGTACTCGATTGCTCTAAAAAAGCAAACGCCCCAAAAGAAACCACCGTAATAGTGCAGAAAAGCGTTGATTTGGGAGATATACACAGAAATGAATTTAGGAAAGTAAAGATTAAGATGTCGCGCGCCTATCACTACCAAAATAATAAGGATCCGGACTGTGATAGTGAAAAGGAATTGATTATTGCGGAAGACCCGGTCGAAGAGCCCCTGTCATCCCCGTCTCCTGGAAGAGACCCGACCGTCTCCACAGTTATCGTCCTAGAATCTTCACAAAACAACATGGAAACCGTGACTAAATCATACTACGAAGCGGAAACGTCTTCTCCACCTCCCCCGCCAACTTTTCTCCGTTACACACCACCGAGCTCGAGCATACTTGAAACTATTCTTACAGGAAATCGATTGGACACCAACAATAATGATTCCAACAGAAGACAGCCTAATGCTACGCCACCGCCGACTTCACCCACAGAAATGGCTTATTCTTACAAGAAAAGCCAACGATATGGTAACGCGTGTAGCCCCGACTCGAGCTCCAACTTGCCAAGTCCAGTTCCCGGCCTCATGCCGATCGGACCTCAGATCATTATTCCGCGCAACAACCATCCAGTTCCTTCACCGCAGCCTCCGGCACTCATGTATGCTTCTCCACCGCATCAGATGGTGCCGCATACAACAGAAATTAGAGAAATAAGAGAAATCCGAGAAATACGAGAGATGCGCTACGAGAGTCATTCTTCGCCAAATTACCCGTATAGCATGTATTCTCCTCCTTACTCTTCAATGATGAGACTCAGTGGCTCTCCACCCAGCGTACATTCCCCGCCTGTATCTTCCAGCCACCAGTACGATAGGAGCGGCCACCAGGCTCAGTACCCGCCGTCTTCCAGCGTGATCACATTAAAAAACTGCTCGCAGTTGAGCATGCTACAAAATGCAAATATGAATCACCACCTTCTGCAACCCTTGCCTCCGCTACATTCTCCTTCCCGCCATTCTCCACCGGGAAGTCTAAGCCCTGACGGCGGTTCCTATACACGCAGCTGCAGTCCTCTCAGCCCCGGTTCGCAAAGCTCGAGGGGTTATAGAAGTCTCCCTTATCCTCTCAAGAAGAAAGATGGAAAAATGCATTACGAGTGCAACGTTTGCTGCAAAACTTTTGGCCAGCTATCTAACTTGAAGGTTCACCTGAGAACTCATTCGGGAGAACGTCCATTTAAGTGCAACGTGTGTACGAAGTCCTTCACGCAACTGGCGCATCTACAAAAGCATCATTTGGTCCATACGGGGGAGAAGCCCCACCAATGTGACATCTGCAAAAAGCGCTTCTCCTCCACCTCTAACCTGAAGACCCACCTGAGACTCCACTCCGGCCAGAAGCCGTACGCCTGCGACCTCTGCATGCAGAAGTTCACGCAGTTTGTCCACCTCAAGCTGCATAAGAGGTTGCACACGAACGACAGGCCGTACGTCTGCCAGGGCTGCGATAAGAAATACATCAGTGCTTCCGGTCTGCGCACTCACTGGAAAACCACTAGCTGCAAGCCCAACAACATCGAAGAGGAGCTGGCGATGGCTAACGCGGCCAACACTGAATATTTAGGTCCTAATGACAAAGATTGTCCGGAAGAATCCTTTGACATGCGACCTCTCCCGAGGCTCCTGGGTCCGGGGGGATTCCTCCAACTGCCTCCCCCGCTACTGTCCCAGCACATAGATTACCAGAGCCACCAccagcagcagcagcaacaccagcagcagcagcagcagcagcagcagcagcagcagcagcaccAGCAGCCGCACCAACACCAGTCTCTCTCCGGTCACCGAGAGCACCCCGGGAGCCACCAGGTGCCCCTCGGCAGCCCCATGACGCAGTCCGCCGACAGACACTACACTCCGCCGAGGCAGGACGAGACGAGGCCCAGTGTGATCGAGTCAAACCAACCTCTCATAATCGAGTGTACGTAA
Protein Sequence: MSDCFPEVSLWTKRDWPLIGRRWHDSNMDRSQQQQVEHEACTLREEDYERLAVYIVPDVPCAPGTKERAEKTLPRSLTLKPSVVLSTPNTPTEGVWSAGVIPKGTRFGPFEGTRTPNSPDNKVSWRYYWRVQETVRHHTYGNIKIFKDNDYYYLDGSDTSMANWMRYVASAYSFTVMNLAACQHGEHIYFYTIRDIMPNEELMVWYCKDFATRLGYDVDPERATYSICKEETIKKAYGLPPAPVHPEIAFNHMKYVLGLSNPKDLLRADSPATARPPTPPADPGVPTSASSQPVRVISRRSPPAQRHPSPVVAYKTEQSVMIVDRRESTASVIHPRQESPHRIHHRENSTIIVPQQKNSPSHGVRVGGPPRSPSAPAPAPYDHHLLATADGSVRSDEGYHSNGYHDDGFTPPEDSSDSDSENNYVLDCSKKANAPKETTVIVQKSVDLGDIHRNEFRKVKIKMSRAYHYQNNKDPDCDSEKELIIAEDPVEEPLSSPSPGRDPTVSTVIVLESSQNNMETVTKSYYEAETSSPPPPPTFLRYTPPSSSILETILTGNRLDTNNNDSNRRQPNATPPPTSPTEMAYSYKKSQRYGNACSPDSSSNLPSPVPGLMPIGPQIIIPRNNHPVPSPQPPALMYASPPHQMVPHTTEIREIREIREIREMRYESHSSPNYPYSMYSPPYSSMMRLSGSPPSVHSPPVSSSHQYDRSGHQAQYPPSSSVITLKNCSQLSMLQNANMNHHLLQPLPPLHSPSRHSPPGSLSPDGGSYTRSCSPLSPGSQSSRGYRSLPYPLKKKDGKMHYECNVCCKTFGQLSNLKVHLRTHSGERPFKCNVCTKSFTQLAHLQKHHLVHTGEKPHQCDICKKRFSSTSNLKTHLRLHSGQKPYACDLCMQKFTQFVHLKLHKRLHTNDRPYVCQGCDKKYISASGLRTHWKTTSCKPNNIEEELAMANAANTEYLGPNDKDCPEESFDMRPLPRLLGPGGFLQLPPPLLSQHIDYQSHHQQQQQHQQQQQQQQQQQQQHQQPHQHQSLSGHREHPGSHQVPLGSPMTQSADRHYTPPRQDETRPSVIESNQPLIIECT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00815391;
90% Identity: -
80% Identity: -