Espl023268.2
Basic Information
- Insect
- Eubasilissa splendida
- Gene Symbol
- -
- Assembly
- GCA_031772225.1
- Location
- CM062861.1:20172362-20174917[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0061 0.5 11.9 0.4 2 21 54 73 53 74 0.93 2 19 0.0051 0.42 12.2 0.1 2 21 79 98 78 99 0.93 3 19 0.00043 0.035 15.6 0.3 1 23 103 126 103 126 0.95 4 19 9.4 7.8e+02 1.9 1.9 2 12 130 140 129 152 0.85 5 19 0.13 10 7.8 2.6 1 23 284 307 284 307 0.93 6 19 0.00037 0.03 15.8 5.4 1 23 355 378 355 378 0.95 7 19 0.83 69 5.2 5.0 1 23 390 413 390 413 0.95 8 19 0.12 9.6 7.9 4.0 2 23 418 440 417 440 0.93 9 19 1.1 90 4.8 4.4 1 19 446 464 446 468 0.93 10 19 0.014 1.2 10.8 1.9 2 23 475 496 474 496 0.96 11 19 3.7e-06 0.0003 22.1 0.2 3 23 509 530 508 530 0.97 12 19 0.00015 0.013 17.0 2.3 1 23 566 588 566 588 0.98 13 19 0.0047 0.39 12.3 2.4 1 23 594 617 594 617 0.96 14 19 0.095 7.8 8.2 0.3 2 23 623 645 622 645 0.95 15 19 0.0016 0.13 13.8 0.1 1 23 660 683 660 683 0.98 16 19 0.0039 0.32 12.5 0.4 2 23 690 711 689 711 0.97 17 19 0.00014 0.011 17.1 1.2 2 23 719 741 718 741 0.94 18 19 0.00025 0.02 16.3 0.3 1 23 747 769 747 769 0.98 19 19 0.049 4 9.1 4.1 1 23 775 797 775 797 0.96
Sequence Information
- Coding Sequence
- ATGACTATTGTAGAATTAGACTCGGACACTAGTAAGGAAGCGAAAGGGAAATCGCAACCATACCGTGAAAAAAAGCACCCACCAAATAATCTTTGGAATCATTGTTGTTTATCAGGTGACCAGCTTGGGgatcttttcaataaaaaagataatttggTTAGTTGCCACCTGTGCTCCAAGAGTTTTATCAACGGGCGTCAGCTAAGTGCCCATCTTTTGAAATGTTCCGAAATTGTATGCGCTAAATGCAAAGTTAAATTTTCCAACAAAGCTCTGCTCGAAAGCCACCAAAGTATTTGCGCTATATTTGCTTGCTTGCAATGCCCTAAGCGCTTCATCAGCTCCGACACGCTTGATGCCCATCAGCTTAGCAAACATACCATTTCCAAATGTCAATACTGTTCCGCAACCTTTAGATCTGACGCAGATTGCGATACACATAAATCTGACTACCACAACTTCAATTGCCAAGTATGTCTAAAAGCCTTTTTGTATACTATCGATAAAATGAAAAGTAAGTACGCAAACACTAATGGGAGAATAGTATGTGATCTGTGTGAAATAAATGGCGCTTCCCCTCAGGATGCTTCCAAATCTGACGGCAAAGGGGATACGCCCACGCGCAGTGCTAAGGGGAAACGTGAAGCGGTGAGTCATATTAAGATGGAGGAAGTGGATAGTGACACTTACCCAGTCAAGCTGGAGAAGGGAATGAAAGAAAGCACTGGCAAAGCGCAGGTTATAGGTACACTGGCTGAAGGTGTAGATAATATTTCGCAAGAAGATgcattttatgcaattttaCCTGAAAATGATTCTTTCGAGGAGactgatgaaaataatatgcaGTACCAGTGCTGCTATTGCAAaggaatttataattctttcaATGATCTAAATAAACACCTGATCGATTCTCACAACCTCCAGCTCCAGGAACTATCGACGGACTCACAAGTGGAAAAGGAGAATTATACGGATGCATTAGAGAAGTACGAAAACAAATTGGATGAGATGTTTGACAGCGCAGTATCACACGTTGATTTTGAAAATCAAAGTCAATATTCATGCACAGTTTGCGACAAAGTCTTCAAGTCATCAGTCACTTTCAGAAAACACACATTTCGCTGCCATAAAGTGCATCTCTTACTAGGTGTGGATAAACAGTTCCACTGCCAACATTGCCGAGTAGAACGGAACACGTTGTCAGAGTTGAATAAACATTTGTACTCCAGGCACGAATCTAACATCAAGTGTGACCACTGCGACCAGCTGTTTTGTACAAagcgagaaaaaaaaatacatatattaggtCGACATCCCGACCAGCCAGCCTTCACGTGTTTGGATTGTTCCCTGAAGTTTGGCTCACACAATGAGCTAAAGCAGCACTGCTCGTGGCACTGGTTCCATGAGCTGATAGAGTGCAgggattgtaataaaaaaatcaagggcaagaagaaattcaaaattcatatgAATTATCATAAGATACGGCAAAGTCAAAGTGACAAGGAAATATTGTGTCCGGAATGCGGGAAGAGTTTGTCATCTCGTTCCAGTCTCCAGGCCCATTTGCGCTATGTGCACCGAGGGGGTAATGAAGAAACTGTTCTGTGCGGGGATTGCGGTCTACTCGTTAAAGTGAGACGTTTCAATCGTCATCAAGAGCGTATGCACAGTCAAGGGAACCTGTTTCGTTGTCATATCTGCTCTAGGGCTTTCTTTGCTAAGGAACTTCTACGTCAACACATGGATACTCACATCGATGGGCGCCCTCATGAGTGTGATCAGTGCACCGCTGCCTTCAAGCAGGTGCGCAACTTAAGAATGCATAAACGTAACTACCATTCAGACAATAACACCATGTGCAAAATGTGCAACATCAACTTTGATAATGTTGAAGCATACTCTGAACATCGCTTGACCTATCACAAGCGTACTCCCAGGCCGATTAAGCTCGATGCCGAAGAGGGCTTTCAGTGTCCACTCTGCCCCAAGATTCTGAAATCTAGTCGGGCAGTAGCCACCCACCGCCGCATAGCTCATGAAAAACACCTCCACGTTAAGTGTGACTTGTGCAATCTGGAATTTCCCTTCATTCGCCAGCTGCAGAACCACATGACGAGTCATACGGAGCCCAAGCCCGATCTGAGCTGCGGCTTCTGCCACCGGACCTTTACTACACTGGGTTCTCTCAATAGCCACATCAAGTGGGTGCACGTGGGCGAGCGAAACTTTCCTTGCTCGTACTGTCCTGCCAAGTTCAAGCGTAAGGACGCGCAAATTGTGCACGAGCGCACACATACAGATGAGCGACCCTATAGCTGCGGAGTTTGCCAGCGTCGCTTCCGCCAGCGCACGGACTGCAAACGCCACGAAGCCAAACACAGCATGCCGGGCTTCCGCTATAACAAGCCGCACCGCATGCGCCCCCGTGCCCCACCCGAGGTGGTCATCGAGGAAGTGGTGGAGCAAGAGGGCCCCCTGCTGCTGCAGGTTCCGGGAGAGGACAATCAGGCGGCCGCCTTCCTCAGCTACATTGTGCAAAACTAG
- Protein Sequence
- MTIVELDSDTSKEAKGKSQPYREKKHPPNNLWNHCCLSGDQLGDLFNKKDNLVSCHLCSKSFINGRQLSAHLLKCSEIVCAKCKVKFSNKALLESHQSICAIFACLQCPKRFISSDTLDAHQLSKHTISKCQYCSATFRSDADCDTHKSDYHNFNCQVCLKAFLYTIDKMKSKYANTNGRIVCDLCEINGASPQDASKSDGKGDTPTRSAKGKREAVSHIKMEEVDSDTYPVKLEKGMKESTGKAQVIGTLAEGVDNISQEDAFYAILPENDSFEETDENNMQYQCCYCKGIYNSFNDLNKHLIDSHNLQLQELSTDSQVEKENYTDALEKYENKLDEMFDSAVSHVDFENQSQYSCTVCDKVFKSSVTFRKHTFRCHKVHLLLGVDKQFHCQHCRVERNTLSELNKHLYSRHESNIKCDHCDQLFCTKREKKIHILGRHPDQPAFTCLDCSLKFGSHNELKQHCSWHWFHELIECRDCNKKIKGKKKFKIHMNYHKIRQSQSDKEILCPECGKSLSSRSSLQAHLRYVHRGGNEETVLCGDCGLLVKVRRFNRHQERMHSQGNLFRCHICSRAFFAKELLRQHMDTHIDGRPHECDQCTAAFKQVRNLRMHKRNYHSDNNTMCKMCNINFDNVEAYSEHRLTYHKRTPRPIKLDAEEGFQCPLCPKILKSSRAVATHRRIAHEKHLHVKCDLCNLEFPFIRQLQNHMTSHTEPKPDLSCGFCHRTFTTLGSLNSHIKWVHVGERNFPCSYCPAKFKRKDAQIVHERTHTDERPYSCGVCQRRFRQRTDCKRHEAKHSMPGFRYNKPHRMRPRAPPEVVIEEVVEQEGPLLLQVPGEDNQAAAFLSYIVQN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -