Espl028915.1
Basic Information
- Insect
- Eubasilissa splendida
- Gene Symbol
- -
- Assembly
- GCA_031772225.1
- Location
- CM062867.1:11012339-11052669[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00061 0.051 15.1 6.2 1 23 237 259 237 259 0.96 2 12 2.5e-05 0.0021 19.4 1.3 1 23 307 329 307 329 0.98 3 12 0.0011 0.087 14.3 7.1 1 23 335 357 335 357 0.99 4 12 0.00012 0.01 17.3 0.5 1 23 363 385 363 385 0.96 5 12 0.00033 0.027 15.9 2.1 1 23 391 413 391 413 0.97 6 12 0.0089 0.74 11.4 2.2 1 23 418 440 418 441 0.93 7 12 0.15 13 7.5 0.6 2 23 468 489 468 489 0.97 8 12 0.00013 0.011 17.2 0.1 1 23 493 515 493 515 0.98 9 12 0.00036 0.029 15.8 0.6 1 23 522 545 522 545 0.90 10 12 6.2e-05 0.0052 18.2 0.7 3 23 553 573 552 573 0.98 11 12 9.1e-08 7.5e-06 27.1 0.6 1 23 579 601 579 601 0.98 12 12 0.00015 0.013 16.9 2.9 1 23 607 629 607 629 0.99
Sequence Information
- Coding Sequence
- ATGGAACTCTCAGTGGTCCCAAATAATCGACACTACGCAGGACAGAGAGCGATAGAAGAGTGCTGTTCAAGCATCTGTGAAAAAGTGAGTGATGCGGCCACCGCGCAGGCCGCTCGGCCCCCGCTGGTCACTGGCTGCATACATGAAGATAGGAAAGACAAGAGTTTAGACATAGACCGCCGCTCCCTGAGAAAGAGTCTGGAGGTCAACCATTTTGGAACGACTCTCAGGCCCTCAGATGACCGATTCCAGGCTCTGGTTGCTCGAATGCGAATAGTGACATTGAGAAAGTGGCAAGAAAGGTGGGACACTGTCACGCAGGGCAGATGGACTTACACCTTTCTCCTCTTTTTGGCGTTGAAAATAAAAGGTGGAGGCGGTCCTCTGGCGCCGGACCACGACAATATGCAGGTAGATAAAGATGACGGGCTCCCGCAGCGAGTATGTTCAGATTGTGCCGAGTTGCTGCCAAACTTTTTCACATTTAGAAAGCGCAGTGAAGAAGTTCACAAGGTTTTAAGTGATGCTCTGGCCAGCAAGAAGAGGGAACTTACAAAACCAACCACCGAAGAAGGAACGCTAGAAGAAAACCCTTTAGCTGAtgtaaaaaatgATATCACGAGTGACGGTAAAGCAGAGTGTAGGGGCGCCGGGCAGAAAGTGCGCACACGCAGGCGATCAAAGATAAGAAACCCGAGATACAAAAGTCACGTGTGTAATATCTGCAATAAAAGCTTTAGAGATTTTTGCCTTCTTAAAAAGCACAAGGAGTCTCACAATTCTAGCAAGCCGTATATCTGCAAAAGTGGCACATGCAGAAAATATTGCTTCGCTACCAAGTTTGAGCTGGACCTCCACACGCACGTGAAGCATTATGAAGACGCGGTCCGGACCGAGGGCAAGCCAAGTGAGGGCATGTTTGTGTGCAAGTTCTGTCCCAAAGTATTCCCCAAGCGGAGGAACATGAGGGAACACATGAGCTCACACCGACCAGACAAGAAATACCAGTGCCGCTATTGTGAAAAgggatTTAACTACCATCATCATCTGATCAACCATGAGAGGGTCCATACCAAGGAGTGCCCGTACCTCTGCCAGGAGTGTGGTAGCAGTTTTAACACCACAGACAAGTTAGCAGTTCACCTTCGCAGGCACGCCAACATCAAACCTTACTCCTGTACCAAGTGCGATAAGAAATTCCTAACTTCCACACAACTGAACTCCCACATGGTTAACCATGATGGTGGCAGTTTCATGTGCTCCTCATGCGGAAAAACTTTCATGGCGCTAGCAACCCTCAAGAAGCACTCCCTATACCATCACGGCAGCGAGGGGAGGCCTGCGGGTGGGATCAGCAGGAGAGGGAAGGCAGCCACGGAAGGGAAGCCTGTGGGCGGAGGGACCTGCCACATTTGTGGAGTATCTCAACCCAACATGAAAGAGATGGATGCTCATATGAAGACTCATATCTGCCAATACTTCTGCCCCAAGTGTTCCAAGGGCTTCCCCATCATCAGTGCCCTAGAGGCTCACATCAAAACACATTCTGCTGGTGAAAGATCGCATGTGTGCAACAAGTGCGGGGCTGCCTTTAACCGACCGGAGCATCTAAGAGGTCACGAGGGGCGCGTGCACGGGGGTTACCGGCCCGTGGCCTGCCCGCACTGTCCGCGCAGATTTATGATCCAAGCGGACCTTAACAAACATGTCCGCACGCACACAGGAGAGAGGCCATACGTGTGCAACGAGTGCGGGCGTAGTTTTATTCAGTCCACAAACTTGCGCATGCACATCCGGCAGCACAGCGGTGAGCGGCCCTACAAGTGCGAAGTTTGCCAGAAGGGCTTCTGCGCGCTGACGACGCTCACCTACCACATGCGCTCACACTATTCTATGGCCAGTACGaaatctGAGTTTGATCCGATAATTCCAAAATCAAATCCCACAAAAGTCAACATGTTGCAGATTACTGGTTTACGAGAATCTCTCACCGGCACTGTAAGAAGAAAATCCATCAAAGATAATAAAGCTGTTGAAGAAGATGCAAAAACAATAAAGGCAGTTGCAAACGTGGATGGGTGTAATGAAACTATTGGTGCGGCAATAATGGccgttgaaaatattattgatgataATCAATTGTCTgtgcaatga
- Protein Sequence
- MELSVVPNNRHYAGQRAIEECCSSICEKVSDAATAQAARPPLVTGCIHEDRKDKSLDIDRRSLRKSLEVNHFGTTLRPSDDRFQALVARMRIVTLRKWQERWDTVTQGRWTYTFLLFLALKIKGGGGPLAPDHDNMQVDKDDGLPQRVCSDCAELLPNFFTFRKRSEEVHKVLSDALASKKRELTKPTTEEGTLEENPLADVKNDITSDGKAECRGAGQKVRTRRRSKIRNPRYKSHVCNICNKSFRDFCLLKKHKESHNSSKPYICKSGTCRKYCFATKFELDLHTHVKHYEDAVRTEGKPSEGMFVCKFCPKVFPKRRNMREHMSSHRPDKKYQCRYCEKGFNYHHHLINHERVHTKECPYLCQECGSSFNTTDKLAVHLRRHANIKPYSCTKCDKKFLTSTQLNSHMVNHDGGSFMCSSCGKTFMALATLKKHSLYHHGSEGRPAGGISRRGKAATEGKPVGGGTCHICGVSQPNMKEMDAHMKTHICQYFCPKCSKGFPIISALEAHIKTHSAGERSHVCNKCGAAFNRPEHLRGHEGRVHGGYRPVACPHCPRRFMIQADLNKHVRTHTGERPYVCNECGRSFIQSTNLRMHIRQHSGERPYKCEVCQKGFCALTTLTYHMRSHYSMASTKSEFDPIIPKSNPTKVNMLQITGLRESLTGTVRRKSIKDNKAVEEDAKTIKAVANVDGCNETIGAAIMAVENIIDDNQLSVQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -