Espl033953.1
Basic Information
- Insect
- Eubasilissa splendida
- Gene Symbol
- -
- Assembly
- GCA_031772225.1
- Location
- CM062872.1:8797222-8798475[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.026 2.2 9.9 2.4 3 23 83 103 81 103 0.98 2 12 0.0001 0.0085 17.5 1.4 1 23 110 132 110 132 0.98 3 12 0.00019 0.016 16.7 1.5 1 23 138 160 138 160 0.91 4 12 0.00021 0.018 16.5 0.1 3 23 167 187 166 187 0.96 5 12 1.2e-06 0.0001 23.6 1.0 1 23 193 215 193 215 0.98 6 12 3.8e-07 3.2e-05 25.1 2.4 1 23 221 243 221 243 0.97 7 12 0.00018 0.014 16.8 0.2 1 23 249 271 249 271 0.98 8 12 0.034 2.8 9.6 0.0 3 23 279 299 277 299 0.95 9 12 0.084 6.9 8.3 0.1 1 23 304 326 304 326 0.93 10 12 3.9e-05 0.0032 18.8 2.3 3 23 334 354 332 354 0.95 11 12 2.2e-05 0.0018 19.6 3.3 1 23 360 382 360 382 0.98 12 12 1.9e-06 0.00015 23.0 0.8 1 23 388 410 388 410 0.98
Sequence Information
- Coding Sequence
- ATGGTTTCTGATAAACCGAGTACGTCTGAAACGACTTCGATGGAGATGAAACAATATCCAGCACTCGATGAAGACAGTAGAGTCTCTAAACCGACCGCCAAGCAAGATTTGATACTGAATAAACCTAACAGAATATCGGTGCGAAGTCTGAGATCTATGAAAGAAAACCCCATGTCTGATGAAGAAGATAACATAAATGAGAATTTCGAAACTACCGGTGAATCCAAAGAAAAAACCTGCCTTCTGTGCCACATGTGCAACATGACATTCCAACTGGACAGAGATCTGAAGCAACATTACCTGACGCACAAAATCGAGGATGTGAAATACTCATGCTACGACTGCGGCCGACTTTTCTCTAAACAAACGAGTTTAATACTCCATTCAAAGACTCACAAGGATGAGAAGTCGTTCAACTGTATCCTGTGCAATGAGTCCTTCAAGCGCAAAGGCAAGTTAAGAGATCACATGAAACTCCACGGACAAGAGAAGCTCTTGTGCAAAGATTGCGGGAAAATATTTGCTGACATCACCGCGTTCAAAAAGCACATTGTCCTGCACACGGAGGGAAACCCGTACGCCTGCAACCTGTGCGATCGCACTTTCAAACGTCCCGACTATTTAAAGGATCACAAACTCACTCACGGCACGGACAGATCCTTCAACTGCGAGGAATGCGGGAAGAATTTCAAAAGCAGAAGCAATCTTCGTTCGCACAAACAATCCCACGTTAACGACAAACCGTACTCTTGCGAGCTATGCGTCAGCGTGTTCAAGAGGCCACAAGCGCTGAGGATCCACATGCAGCTGCACCAGAGCGCAACGCAGGTGATATGCGGTAAGTGCGAGAAGGGTTTTGCGAACGATGTTATCTTAAAAAGGCATATGGTAATTCACACCGACTCGAAGTTTCCCTGCCTGTTGTGCGACGATGTTTTCGACGAAGACGCGCAACTCAAGCGACACATGCCGACGCACGCAATTCAGAAGCCGCACCTGTGTGAGGTGTGCGAGAACTCCTTCACCTCGAAAGTGACTCTGAGAAAGCACATGAGACTGCACAGCGAGGTGATGCAGTATCCGTGCCACCTATGCGATGCGGGCTTCAGGAGGAAGGAACACTGGCAGTCGCATCTGCGGAAACACACAGGAGACCGGCCGTTTGTTTGTGATATATGCGGGAAGACGTTTACCATGGATTATCTCCTAACGAAGCACAGGAAGATTCACGCCGCAAAGAAGTTCCATCTTTGA
- Protein Sequence
- MVSDKPSTSETTSMEMKQYPALDEDSRVSKPTAKQDLILNKPNRISVRSLRSMKENPMSDEEDNINENFETTGESKEKTCLLCHMCNMTFQLDRDLKQHYLTHKIEDVKYSCYDCGRLFSKQTSLILHSKTHKDEKSFNCILCNESFKRKGKLRDHMKLHGQEKLLCKDCGKIFADITAFKKHIVLHTEGNPYACNLCDRTFKRPDYLKDHKLTHGTDRSFNCEECGKNFKSRSNLRSHKQSHVNDKPYSCELCVSVFKRPQALRIHMQLHQSATQVICGKCEKGFANDVILKRHMVIHTDSKFPCLLCDDVFDEDAQLKRHMPTHAIQKPHLCEVCENSFTSKVTLRKHMRLHSEVMQYPCHLCDAGFRRKEHWQSHLRKHTGDRPFVCDICGKTFTMDYLLTKHRKIHAAKKFHL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -