Basic Information

Transcription Factor Domain

TF Family: GTF2I
Domain: GTF2I domain
PFAM: PF02946
TF Group: Other Alpha-Helix Group
Description: This region of sequence similarity is found up to six times in a variety of proteins including GTF2I. It has been suggested that this may be a DNA binding domain [2, 1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.11 4.1e+03 -0.8 0.0 39 52 32 45 28 52 0.86

2 12 0.0043 1.6e+02 3.7 0.0 3 31 119 147 117 154 0.90

3 12 0.0038 1.4e+02 3.9 0.0 3 32 137 166 135 172 0.90

4 12 0.0046 1.7e+02 3.6 0.0 3 31 155 183 153 190 0.90

5 12 0.0043 1.6e+02 3.7 0.0 3 32 173 202 171 209 0.90

6 12 0.0043 1.6e+02 3.7 0.0 3 31 191 219 189 226 0.90

7 12 0.0043 1.6e+02 3.7 0.0 3 31 209 237 207 244 0.90

8 12 0.0051 1.9e+02 3.5 0.0 3 31 227 255 225 258 0.91

9 12 0.0049 1.8e+02 3.5 0.0 3 31 245 273 243 277 0.91

10 12 0.012 4.3e+02 2.4 0.0 3 31 263 291 261 294 0.90

11 12 0.0073 2.7e+02 3.0 0.0 3 31 281 309 279 312 0.91

12 12 0.0065 2.4e+02 3.2 0.0 3 31 299 327 297 335 0.90

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.11	4.1e+03	-0.8	39	52	32	45	28	52	0.86
2	12	0.0043	1.6e+02	3.7	3	31	119	147	117	154	0.90
3	12	0.0038	1.4e+02	3.9	3	32	137	166	135	172	0.90
4	12	0.0046	1.7e+02	3.6	3	31	155	183	153	190	0.90
5	12	0.0043	1.6e+02	3.7	3	32	173	202	171	209	0.90
6	12	0.0043	1.6e+02	3.7	3	31	191	219	189	226	0.90
7	12	0.0043	1.6e+02	3.7	3	31	209	237	207	244	0.90
8	12	0.0051	1.9e+02	3.5	3	31	227	255	225	258	0.91
9	12	0.0049	1.8e+02	3.5	3	31	245	273	243	277	0.91
10	12	0.012	4.3e+02	2.4	3	31	263	291	261	294	0.90
11	12	0.0073	2.7e+02	3.0	3	31	281	309	279	312	0.91
12	12	0.0065	2.4e+02	3.2	3	31	299	327	297	335	0.90

Coding Sequence: ATGGCGAAAGTAAAATGGCGGCCCTCACACCTGACCCGGCAATGGCCGCCCGCCGAGATCAGACTCGGGGCAGACGGCAGACGCTGCCGACACGTCCGCGCTATCCCCGCCCAATTAAGTTTTAATCGCCCAACTCCTGGAGGGACAATGAGATGTTTTTGCGAGATTTTCGTCGAACATGAAGACGGCCAAGACTTCTTCTTCCAGTGTAAGGACTTTCCTTCCACACTGTTCGTCATCTCTTCGACAAATATGTCCTGCCGCTTGAGGATGCAGATATTTTGGGCATTATCTGTTACCTTTGTTCTCTGGCTACTGGTACTCGAGATCACTACACGTGTACTGGGTGTCACTCGCTCGGTGCACACTATGTACAGCGAGATCACTGCACGTGTACTGGGTGTCACTCGCTCGGTGCACACTATGTACAGCGAGATCACTGCACGTGTACTGGGTGTCACTCGCTCGGTGCACACTATGTACAGCGAGATCACTTCACGTGTACTGGGTGTCACTCGCTCGGTGCACACTATGTACAGCGAGATCACTGCACGTGTACTGGGTGTCACTCGCTCGGTGCACACTATGTACAGCGAGATCACTGCACGTGTACTGGGTGTCACTCGCTCGGTGCACACTATGTACAGTGAGATCACTGCACGTGTACTGGGTGTCACTCGCTCGGTGCACACTATGTACAGCGAGATCACTGCACGTGTACTGGGTGTCACTCGCTCGGTGCACACTATGTACAGCGAGATCACTGCACGTGTACTGGGTGTCACTCGCTCGGTGCACACTATGTACAGCGAGATCACTACACGTGTACTGGGTGTCACTCGCTCGGTGCACACTATGTACAGCGAGATCACTGCACGTGTACTGGGTTTCACTCGCTCGGTGCACACTATGTACAGCGAGATCACTGCACGTGTACTGGGTTTCACTCGCTCGGTGCACACTATGTACAGCGAGATCACTACACGTGTACTGGGTGTCACTCGCTCGGTGCACACTATTTTAGGGGTTGTGTTTAAGGGTAATACAGGAAATATAGGTGTTCACGTGTGA
Protein Sequence: MAKVKWRPSHLTRQWPPAEIRLGADGRRCRHVRAIPAQLSFNRPTPGGTMRCFCEIFVEHEDGQDFFFQCKDFPSTLFVISSTNMSCRLRMQIFWALSVTFVLWLLVLEITTRVLGVTRSVHTMYSEITARVLGVTRSVHTMYSEITARVLGVTRSVHTMYSEITSRVLGVTRSVHTMYSEITARVLGVTRSVHTMYSEITARVLGVTRSVHTMYSEITARVLGVTRSVHTMYSEITARVLGVTRSVHTMYSEITARVLGVTRSVHTMYSEITTRVLGVTRSVHTMYSEITARVLGFTRSVHTMYSEITARVLGFTRSVHTMYSEITTRVLGVTRSVHTILGVVFKGNTGNIGVHV

Sequence clustering based on sequence similarity using MMseqs2