Basic Information

Gene Symbol
stc_1
Assembly
GCA_947086405.1
Location
OX352267.1:3856757-3872185[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 2 2.5e+04 -4.3 1.6 15 19 474 478 473 478 0.81
2 13 0.04 4.9e+02 1.3 1.2 2 10 506 514 506 514 0.93
3 13 4.6e-05 0.57 10.7 16.3 4 19 522 537 520 537 0.93
4 13 5.3e-09 6.5e-05 23.3 12.1 1 18 573 590 573 591 0.98
5 13 1.3e-06 0.016 15.6 13.6 1 19 634 652 634 652 0.99
6 13 1.4e-05 0.17 12.4 13.9 1 19 693 715 693 715 0.88
7 13 2 2.5e+04 -5.3 2.2 6 10 745 749 745 749 0.94
8 13 0.00058 7.1 7.2 6.4 1 11 755 765 755 766 0.95
9 13 0.031 3.8e+02 1.7 0.5 4 10 770 776 769 776 0.93
10 13 3.7e-06 0.046 14.2 14.0 3 19 784 800 782 800 0.92
11 13 0.038 4.6e+02 1.4 17.2 1 18 839 855 839 856 0.81
12 13 2.4e-07 0.0029 18.0 13.8 1 17 892 910 892 916 0.84
13 13 0.00032 3.9 8.0 4.8 1 13 922 933 922 934 0.95

Sequence Information

Coding Sequence
ATGTCGCAGTGGAACAACTCTTACGCTTACAATAATCAGTATCAAGGTGCTGGCAACTGGAATGGTGATGCCAGTGGGCAATATATGAACCAAGCTTTCTATCCTAACTCTAGCAACCAATACGTGAGTTTTAATGAATTCGTGTCTCAGATGCAGAGTAACAACGTGCCAGCGGCTAACGCCGCCAACTTCAACAATGTACAATACCAGAACTATCCTGTAGACTACAATTACCAAAATATGCCTTCGTCCTCCCAAAACACTCAGCATGACTCCTACAGCTATAATCCCAACGTTCCCAGTGTTGCCAATGAAGATTCTTATCAAGCACAAAGCCAGTACAATCCAGTGTTGCCAGAGACGAACTCATTCACAAATGAAATGGTTATCAAGTCTAATCTCACCCCCACTGCAATGGAGTTTGTACCTAAATATTCTAATGTAAAGAATACTTCAAGCTCACAAAATACTCAAGCAGAATCTTCCACCACATATAATGGCATTAAAGATACTAAAGGCAGTCATGGTAGCTCTTCAGATAAAAATTGGAGGCAAAGACCACAGTCCTCACAACAGAATGATAGTGCTCGTCATAATGATACATACAGACATAACGAAACAAATAGATATGAATCAAATAATCAAAGTTATAAAAATCATGACTCGAATGGCTCTAGTCGAGAATCCAATAGCAGTAACCGTAATCGTGAATATGATAGTCGTAACAATGAATCTAGCAGCCGTACTTATGAATCCAATCGTCGTAACTATGAATCTAATAGCCGTAACAATGAATCCAGTACCTATAACAGTGAATCCACCAGTCGTAACCAAGAATATAATGGGCGGAACAGTGAAACCAGTCATAACTATGAATCCAACAATCGTAATCCTGAATCAAGCAGCCGTTACAATGACAACAGGGGCCAATCAAAAGTTAAATCAAAGACTAATAAAGACTCTGAACGTACTTTTTACAATAGTTCGATTAATAAAAGTACACAGGATGTACGGGGTGGAAGAGGGGAAGGATCGGGAAGAAAAAGTTGGGTAGGAAGCCAACGACTGAGAGCTGTAGACCGAAATTTTGTGGAAGATGAACATTATGCAAATACATACCTGCAAGGAAGAGAAGGCAGAGAGGAGAGAGAGAGGGAGCGGGAAAGAGCACCCAAAGTGGATAATGTTGCCAGTCCAATAAAGAAGAATAAAGAAGTAATTGTTCAAGGAGGGGACGCGATGACCCAACGCGAACGGCTCAGCGAGCAACTAGACAAGGGCACCTTGGAATGCCTGGTGTGCTGTGAGCGCGTGAAGCAGACCGACCCTGTGTGGTCGTGCGCCAACTGCTACCACGTGATGCACCTGCGATGCATCAGGCGGTGGGCTCTTAGTAGTGTGGTCGAGGGCAAATGGCGGTGCCCAGCGTGTCAGAACACGAGCGAGGAAGTGCCGAGCGAGTACCGCTGCATGTGCGGCGCGACGCGCGCGCCGGAGTACCACCGCGGCGCGGGCGGCGCGCACACGTGCGGGCGCGCGTGCCGGCGCGCGCGCGCCTGCGTGCACCCGTGCGCGCTGCGCTGCCACCCCGGCCCCTGCCCGCCCTGCCAGGCCACCGTCACCAAGCAGTGCGGCTGCGGCGCTGAGGAGCGGACGGTGATGTGCAGCAACAAGGCGGCGCAGGTGTGCGGGCGGCCGTGCGCGCGCGCGCTCGCCTGCGGGGAACACGCGTGCGCGCGGGCCTGCCACGAGGGGCCCTGCGACCCGTGCGCCGAGGTCATTACACAAGTATGCTACTGCATGTCCCACACCAGCCGCACCGTGCCGTGCTCGGCGGAGCACGCGGGGCGCGCGCGCGCGGCGTGGGCGTGCGGCGGCGCGTGCGCGCACGTGCTGCCGTGCGGCGTGCACGCGTGCGCGCGCGCCTGCCACGCGCCGCCCTGCCCGCCCTGCCCGCTGCTGCCGGACTTCATCGACACCTGCCCCTGCGGGAAGATGCAACTGGAGGCAAACAAGCGGCAGGCGTGCACGGACCCCATCCCGGTGTGCGGCAACATATGCGCGCGCGCGCTGCCGTGCGGCCCGCCCGGCGACAAGCACTTCTGCAAACAGAACTGCCACGAAGGCGCGTGCCCGACGTGCCCCGACAAGACGCTGCTGCAGTGCCGCTGCGGGCACTCCAGCCGCGAGGTGCCCTGCGAGGACCTGCCCTCCATGCTCAACAACGTACTCTGCCAGAAAAAGTGCAACAAGAAGCTGTCGTGCGGGCGGCACCGCTGCCGCGCCGTGTGCTGCGCGGCCGCGTCGCACCGCTGCGCGGCGCCGTGCGGCCGCACGCTGTCCTGCCAGCTGCACCGCTGCGAGGAGTTCTGCCACACCGGACACTGCGCGCCCTGCCCCATCGTCAGTTTCGAGGAGTTAACCTGCGAGTGCGGCAAGGAGGTGCTCCTCCCGCCCGTGCGGTGCGGGGCCAAGCCCCCGCCCTGCAGCGCCACGTGCCGGCGCGCGCGCCCGTGCGGCCACCCGCCGCACCACTCGTGCCACTCGGGCGACTGCCCGCCCTGCGTCGTGCTCACCACCAAGATGTGCTATGGACGTCACGAGGAGCGTAAAACGATACCGTGCTCACAAGAAGAGTTCTCGTGCGGTCTGCCGTGCGGGAAACCGCTGCCGTGCGGCAAGCACAACTGCATCAAGACGTGCCACACGGGGCCCTGCGACACCGGCAAATGCACGCAGCCGTGCAACGAGAAGCGTCCGAGCTGCGGGCACCCGTGCGCGGCGGCGTGCCACGCGGGCGCGGGCGCGGGGGCGGCGGGCGGCGCGGGGGGCGCGTGCCCCAGCGCGGCCGCGTGCCGCCGGCTCGTGCGCGCCACGTGCCCGTGCGCGCGCCGCCACGCCGACAGGCCGTGCGCGGACAACGCCAGAGACCTCACCAAAATACTGAGCGCGCTCGTTGCTACGAAGATGCAAGAAGGTGGTTCAGTCGACCTGTCAGACGTACAACGTCCGGGGTCTATGCTCAAAACATTGGAGTGCGACGACGAGTGCCGAGTAGAGGCGCGCACGCGTCAGCTGGCGCTAGCGCTGCAGATCCGCAACCCGGACGTGTCGGCGAAGCTCGCGCCGCGCTACAGCGACCACCTGCGCAACACTGCCGCCAAGGAGCCGTCCTTCGCGCAGCAGATACACGACCGGCTCACTGAGCTGGTTCAACTTGCCAAGAAGTCGAAACAGAAGACGCGCTCGCATTCCTTCCCATCAATGAACTGGCAGAAGCGGCAGTTCATCCACGAGCTCTGCGAGCACTTCGGCTGCGAGAGCGTCGCCTACGACGCGGAACCCAATAGGAACGTCGTCGCCACTGCCGACAAGGAGAAGTCTTGGCTGCCAGCGATGAGCGTGCTGGAGGTGCTGGCGCGCGAGGCCGGCAAGCGGCGCGTGCCGGGGCCCATCCTGCGCGCCCCGCCCAACCAGGCCGCTAGCGCCACAGCGCTCTCCACTCTCACGTCTAACTCTTCCAAGTCGTCAGGTGGCTGGGCCACTCTGACTTCGACCAACGCATGGGCTGCGCGCGGCCAGGCCCGACAGGCTAGCCAGGCAAGTCAGGCGACCCAACTGAGTCGTACGAGCCAGCCGATCGCCCCACAGCCCGAGAAGATAGACTACTTCGATAACCCGCCAGACAACTAG
Protein Sequence
MSQWNNSYAYNNQYQGAGNWNGDASGQYMNQAFYPNSSNQYVSFNEFVSQMQSNNVPAANAANFNNVQYQNYPVDYNYQNMPSSSQNTQHDSYSYNPNVPSVANEDSYQAQSQYNPVLPETNSFTNEMVIKSNLTPTAMEFVPKYSNVKNTSSSQNTQAESSTTYNGIKDTKGSHGSSSDKNWRQRPQSSQQNDSARHNDTYRHNETNRYESNNQSYKNHDSNGSSRESNSSNRNREYDSRNNESSSRTYESNRRNYESNSRNNESSTYNSESTSRNQEYNGRNSETSHNYESNNRNPESSSRYNDNRGQSKVKSKTNKDSERTFYNSSINKSTQDVRGGRGEGSGRKSWVGSQRLRAVDRNFVEDEHYANTYLQGREGREERERERERAPKVDNVASPIKKNKEVIVQGGDAMTQRERLSEQLDKGTLECLVCCERVKQTDPVWSCANCYHVMHLRCIRRWALSSVVEGKWRCPACQNTSEEVPSEYRCMCGATRAPEYHRGAGGAHTCGRACRRARACVHPCALRCHPGPCPPCQATVTKQCGCGAEERTVMCSNKAAQVCGRPCARALACGEHACARACHEGPCDPCAEVITQVCYCMSHTSRTVPCSAEHAGRARAAWACGGACAHVLPCGVHACARACHAPPCPPCPLLPDFIDTCPCGKMQLEANKRQACTDPIPVCGNICARALPCGPPGDKHFCKQNCHEGACPTCPDKTLLQCRCGHSSREVPCEDLPSMLNNVLCQKKCNKKLSCGRHRCRAVCCAAASHRCAAPCGRTLSCQLHRCEEFCHTGHCAPCPIVSFEELTCECGKEVLLPPVRCGAKPPPCSATCRRARPCGHPPHHSCHSGDCPPCVVLTTKMCYGRHEERKTIPCSQEEFSCGLPCGKPLPCGKHNCIKTCHTGPCDTGKCTQPCNEKRPSCGHPCAAACHAGAGAGAAGGAGGACPSAAACRRLVRATCPCARRHADRPCADNARDLTKILSALVATKMQEGGSVDLSDVQRPGSMLKTLECDDECRVEARTRQLALALQIRNPDVSAKLAPRYSDHLRNTAAKEPSFAQQIHDRLTELVQLAKKSKQKTRSHSFPSMNWQKRQFIHELCEHFGCESVAYDAEPNRNVVATADKEKSWLPAMSVLEVLAREAGKRRVPGPILRAPPNQAASATALSTLTSNSSKSSGGWATLTSTNAWAARGQARQASQASQATQLSRTSQPIAPQPEKIDYFDNPPDN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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