Basic Information

Gene Symbol
-
Assembly
GCA_947086405.1
Location
OX352258.1:3106601-3128507[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 6.1 4.4e+02 2.1 0.2 1 22 253 274 253 277 0.90
2 16 0.013 0.95 10.5 2.6 2 23 398 420 397 420 0.94
3 16 0.0005 0.037 14.9 0.3 1 23 426 448 426 448 0.97
4 16 0.037 2.7 9.0 0.1 1 22 465 486 465 488 0.88
5 16 1.6e-05 0.0012 19.6 2.0 1 23 493 515 493 515 0.98
6 16 5.2e-06 0.00038 21.2 0.7 1 23 521 543 521 543 0.98
7 16 0.00014 0.01 16.7 3.8 1 23 549 571 549 571 0.97
8 16 3.1e-07 2.2e-05 25.0 0.7 1 23 577 599 577 599 0.98
9 16 4.6e-06 0.00033 21.4 2.0 1 23 605 627 605 627 0.99
10 16 1.7 1.3e+02 3.8 0.3 1 13 633 645 633 646 0.89
11 16 1.7 1.3e+02 3.8 0.3 1 13 757 769 757 770 0.89
12 16 1.7 1.3e+02 3.8 0.3 1 13 881 893 881 894 0.89
13 16 1.7 1.3e+02 3.8 0.3 1 13 1005 1017 1005 1018 0.89
14 16 0.08 5.9 8.0 0.2 1 21 1129 1149 1129 1150 0.93
15 16 0.00012 0.0087 16.9 0.5 1 23 1157 1179 1157 1179 0.96
16 16 3.5e-06 0.00025 21.7 4.5 1 23 1185 1208 1185 1208 0.97

Sequence Information

Coding Sequence
ATGTTTCAGGTGTGCGATGATGGAGAGCTGCCTCGGACCATTTGCCCAGGCTGCACCATACAGCTGGAAGCTACTGTCGAGTTCCTGAACCTTATCGTCGCTGGACAGAAAGTCATTCGTGAGCTCCATCAAAGAGAGAGGGATTACAAGAAGACTGTTAACTCAATCACCTCGATCAACAACACTGCTGACCAAGATGTCATCACAGAAAACATTGTATACGAGATCAACACAAGCGAGGGCGTATACCAAGTGGAGCATCCTATCGCCTTACAAATGTCCGGACTTGAGCGCCCAAAGCGCAAGCGGGGCCGGCCCCCCAAGAAATCCAAGAGCCCCGAAGAGCTAGCGCAGGAGGCCGCTACCAAGGAGAAGGAGCTCGCTGCCAAGACCAGAAAGCTAGATGACGTATCAGGGAAAAGAAGGAGGAAGACGCCTACACGATACAGGGAGGCTGTTCAGGGCAAGGATTTAGACAGAATATTAAAGGAGGAAGGCGTAACGGATGGAGAGGAGAGCGAAGCGGAAGCCAAACTGGAAGCGGATAGGGACGTGAAGCCCCTGGTGCCGAAGGAGCCGGAGGTTATTGGGCATTTGGAGGATTCGGGCGAGTTGGTCGTGGTCGTAAAGGGCAAGGGGCGCGGCAGACCCAAAGGGCGCATGCGGGCGACGCGCGAGGAGTGCGCCATATGCGGGCTGCAGTTCACGTGCGTGGGCCGGTACATGGCGCACGTGGCGCAGCACGGGCCCGTGCTGTACCAGTGCGGCGCGTGCGCGGCCGCCTTCGCCGCGCGGCTCACGTTCCAGCACCACCAGCGGGAGAGCGGCCACACCGGGCAGAACATCATACCCTGCGAGAAGGTGGGCGAGCGGGCCGAGCGGGGCGACACGAAGACCGACGAAAACGCAGACGCACCAACAGACGCCCAGGATGCCGTTGACGCCGACCCCGCGGACGCTATGCCCGCCCAGCACAGCCGGTCCCTCCCCAAGCTGCTGCCGGACCTCAGCCCCAAGCAGGAACAGGACCCGCTCGACATCAGCTCGCAGGAGGCTCAGTTCTTGAACAGTCTAGTCAACGAGACGGCGGACATTCCAGCTCCGACGGAAATTGTCGACATAAATAGTGATGCGAATAATAAAGATAAGGAAGATGCAGTAGAGTTAACTAGCAAAGGGAAGGCGAAGCTGAAGTGCAACCACTGCGACAAGCTGTTCAGCAGTAAGCAGAGCAAGTCCATGCATATCAAGGCTGTGCACAAAGGCGAGCGTCCGTACGTGTGCAAGGAGTGCGGCTGCATGTTCGCGTACCCGCGCTCGCTCGCGCTGCACGCCATCTCGCACCGGCGGCACCGCGCGGGCGGCGGCGGGGGCGGGGGCGCCGCCAGGAGATACGCGTGCGACCTCTGCGGGAAGGTGCTGAACCACCCGTCGTCGGTGGTGTACCACAAGGCGGCGGCGCACGCGGGGCAGCGCTACGTGTGCGGCACGTGCGGGAAGCTGTTCAAGCACAAGCAGCTGCTGCAGCGGCACCAGCTCGTGCACTCGCAGCTGCGCCCCTACGAGTGCAAGACGTGCAACGCGTCGTTCAAGACGAAAGCGAACCTGATTAACCACCAGCTGCTGCACTCCGGCGTGAAGAAATTCGCCTGCGAGATATGCAAGCATCGGTTCGCGCACAAGACCAGCCTCACGCTGCACATGAGATGGCATACGGGTTCAAAGCCGTTCGTGTGCAAAACGTGCGGCAAGAGCTTCAGCCAGAAGGGCAACCTGTCGGAGCACGAGCGCATCCACACGGGCGAGAAGCCGTACCAGTGCACCGTGTGCCCGCGGCGCTTCACCACCTCCTCGCAGTACCGCCTGCACGCGCGCCGCCACCAGCCCGACCGGCCCTACGCCTGCGCGCACTGCCCCAAGCGGTACGTCACTCGCACTGTCACGTCGCAGTGTCACACTCGCGCACACCACCTCCTCGCAGTACCGCCTGCACGCGCGCCGCCACCAGCCCGACCGGCCCTACGCCTGCGCGCACTGCCCCAAGCGGTACGTCACTCGCACTGTCACGTCGCAGTGTCACACTCGCGCACACCACCTCCTCGCAGTACCGCCTGCACGCGCGCCGCCACCAGCCCGACCGGCCCTACGCCTGCGCGCACTGCCCCAAGCGGTACGTCACTCGCACTGTCACGTCGCAGTGTCACACTCGCGCACACCACCTCCTCGCAGTACCGCCTGCACGCGCGCCGCCACCAGCCCGACCGGCCCTACGCCTGCGCGCACTGCCCCAAGCGGTACGTCACTCGCACTGTCACGTCGCAGTGTCACACTCGCGCACACCACCTCCTCGCAGTACCGCCTGCACGCGCGCCGCCACCAGCCCGACCGGCCCTACGCCTGCGCGCACTGCCCCAAGCGGTACGTCACTCGCACTGTCACGTCGCAGTGTCACACTCGCGCACACCACCTCCTCGCAGTACCGCCTGCACGCGCGCCGCCACCAGCCCGACCGGCCCTACGCCTGCGCGCACTGCCCCAAGCGGTACGTCACTCGCACTGTCACGTCGCAGTGTCACACTCGCGCACACCACCTCCTCGCAGTACCGCCTGCACGCGCGCCGCCACCAGCCCGACCGGCCCTACGCCTGCGCGCACTGCCCCAAGCGGTACGTCACTCGCACTGTCACGTCGCAGTGTCACACTCGCGCACACCACCTCCTCGCAGTACCGCCTGCACGCGCGCCGCCACCAGCCCGACCGGCCCTACGCCTGCGCGCACTGCCCCAAGCGGTACGTCACTCGCACTGTCACGTCGCAGTGTCACACTCGCGCACACCACCTCCTCGCAGTACCGCCTGCACGCGCGCCGCCACCAGCCCGACCGGCCCTACGCCTGCGCGCACTGCCCCAAGCGGTACGTCACTCGCACTGTCACGTCGCAGTGTCACACTCGCGCACACCACCTCCTCGCAGTACCGCCTGCACGCGCGCCGCCACCAGCCCGACCGGCCCTACGCCTGCGCGCACTGCCCCAAGCGGTACGTCACTCGCACTGTCACGTCGCAGTGTCACACTCGCGCACACCACCTCCTCGCAGTACCGCCTGCACGCGCGCCGCCACCAGCCCGACCGGCCCTACGCCTGCGCGCACTGCCCCAAGCGGTACGTCACTCGCACTGTCACGTCGCAGTGTCACACTCGCGCACACCACCTCCTCGCAGTACCGCCTGCACGCGCGCCGCCACCAGCCCGACCGGCCCTACGCCTGCGCGCACTGCCCCAAGCGGTACGTCACTCGCACTGTCACGTCGCAGTGTCACACTCGCGCACACCACCTCCTCGCAGTACCGCCTGCACGCGCGCCGCCACCAGCCCGACCGGCCCTACGCCTGCGCGCACTGCCCCAAGCGGTTCCTGTCGCGCGGCTCGTGGGCGGCGCACCAGAAGCGCGAGGCGGGCGTGCGCGCGCACGCGTGCCCGCAGTGCGCGCGCGCGTTCACCGAGCGCTGGGCGCTGCTCAAGCACATGCGGCGCCACACCGGCGAGCGGCCCTTCCGCTGCCCGCACTGCCCGCGCACCTTCGCCGACTGCTCCAACCTCAACAAGCACAAGAGGCAAGTCCACAAGCAGATCAGCCTGTTAGTGAACGACAAAAACCAGCCGCCGCAACTCGTGTCCGACCAAACACTCCTGCAGCAGAAGCTCGCCGTGGCGGGGGCGGCGCGGGCGGCGCGGGGGGAGCGCGGGGCGCAGGAACTCGACGAGCGCGTCATATACGTGGCGTACGACGTGAACGACCCGGAGCCAGCCTTCCATATAATTGATCCTGAACAGGCGGCATCTTTCGATGCCAGCAAAGTGCTGTCATCGTGTGAACTGTACACTGGCCCGTCGCTGCTCGTTCCCCAACCGGAGGAGTTAACCTTACCTCTCGAACACATCGAGCATCAGCAGTTGGAGCAACTTGAGAGCGACGAGCTCGCATCGACAGCGCTGGTTTTAAATGATGACGAGCAAATAGAGGTGACGGACGAGCAGGGCAACCCGCTGCACTTCACGATGCAGGACGGCACCAGGCTGGCCATCACCTCCACGGACGGGAAGTCCTTGCAGGTGGTCACACATGACGGGCAGACGATACCCGTTGAGATTAATGGATTCGCTGAAGAGGAAGCAGAGGAACCTCCTGTCCCTGACACGATAATCCACCAACTGAATCTCCAGAAAGCCGCCGAGACCACCGCGTCGTCTCCAGTGACGCACTACTTCACCATCGTCTAA
Protein Sequence
MFQVCDDGELPRTICPGCTIQLEATVEFLNLIVAGQKVIRELHQRERDYKKTVNSITSINNTADQDVITENIVYEINTSEGVYQVEHPIALQMSGLERPKRKRGRPPKKSKSPEELAQEAATKEKELAAKTRKLDDVSGKRRRKTPTRYREAVQGKDLDRILKEEGVTDGEESEAEAKLEADRDVKPLVPKEPEVIGHLEDSGELVVVVKGKGRGRPKGRMRATREECAICGLQFTCVGRYMAHVAQHGPVLYQCGACAAAFAARLTFQHHQRESGHTGQNIIPCEKVGERAERGDTKTDENADAPTDAQDAVDADPADAMPAQHSRSLPKLLPDLSPKQEQDPLDISSQEAQFLNSLVNETADIPAPTEIVDINSDANNKDKEDAVELTSKGKAKLKCNHCDKLFSSKQSKSMHIKAVHKGERPYVCKECGCMFAYPRSLALHAISHRRHRAGGGGGGGAARRYACDLCGKVLNHPSSVVYHKAAAHAGQRYVCGTCGKLFKHKQLLQRHQLVHSQLRPYECKTCNASFKTKANLINHQLLHSGVKKFACEICKHRFAHKTSLTLHMRWHTGSKPFVCKTCGKSFSQKGNLSEHERIHTGEKPYQCTVCPRRFTTSSQYRLHARRHQPDRPYACAHCPKRYVTRTVTSQCHTRAHHLLAVPPARAPPPARPALRLRALPQAVRHSHCHVAVSHSRTPPPRSTACTRAATSPTGPTPARTAPSGTSLALSRRSVTLAHTTSSQYRLHARRHQPDRPYACAHCPKRYVTRTVTSQCHTRAHHLLAVPPARAPPPARPALRLRALPQAVRHSHCHVAVSHSRTPPPRSTACTRAATSPTGPTPARTAPSGTSLALSRRSVTLAHTTSSQYRLHARRHQPDRPYACAHCPKRYVTRTVTSQCHTRAHHLLAVPPARAPPPARPALRLRALPQAVRHSHCHVAVSHSRTPPPRSTACTRAATSPTGPTPARTAPSGTSLALSRRSVTLAHTTSSQYRLHARRHQPDRPYACAHCPKRYVTRTVTSQCHTRAHHLLAVPPARAPPPARPALRLRALPQAVRHSHCHVAVSHSRTPPPRSTACTRAATSPTGPTPARTAPSGTSLALSRRSVTLAHTTSSQYRLHARRHQPDRPYACAHCPKRFLSRGSWAAHQKREAGVRAHACPQCARAFTERWALLKHMRRHTGERPFRCPHCPRTFADCSNLNKHKRQVHKQISLLVNDKNQPPQLVSDQTLLQQKLAVAGAARAARGERGAQELDERVIYVAYDVNDPEPAFHIIDPEQAASFDASKVLSSCELYTGPSLLVPQPEELTLPLEHIEHQQLEQLESDELASTALVLNDDEQIEVTDEQGNPLHFTMQDGTRLAITSTDGKSLQVVTHDGQTIPVEINGFAEEEAEEPPVPDTIIHQLNLQKAAETTASSPVTHYFTIV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-