Esul001710.1
Basic Information
- Insect
- Esperia sulphurella
- Gene Symbol
- -
- Assembly
- GCA_947086405.1
- Location
- OX352286.1:7515345-7520162[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1.4e-06 9.9e-05 23.0 1.4 2 23 145 166 145 166 0.97 2 10 2.8 2e+02 3.2 7.9 2 23 172 194 171 194 0.96 3 10 4.5e-08 3.3e-06 27.7 1.5 1 23 200 222 200 222 0.99 4 10 0.0052 0.38 11.7 0.1 1 20 228 247 228 249 0.95 5 10 4.7e-05 0.0034 18.2 2.0 2 23 260 281 259 281 0.96 6 10 0.00012 0.0091 16.8 0.9 1 23 287 309 287 309 0.98 7 10 1.5e-05 0.0011 19.7 2.0 1 23 315 337 315 337 0.98 8 10 5.1e-06 0.00037 21.2 2.8 1 23 343 365 343 365 0.94 9 10 1.6e-05 0.0012 19.6 1.6 2 23 372 393 371 393 0.97 10 10 1e-05 0.00075 20.3 6.1 1 23 400 423 400 423 0.98
Sequence Information
- Coding Sequence
- ATGTCGTCGGAAGTAGTAGATGTGAAGTCAGATCCTGGTATGGAGTGTTTTGACTCGTCGGAAAAACCTGTCTCCTCGTCACAATATGTGGAGACCGCTCCGCAGCCAGAGTTTGTCAACATTAAAGTGGAAATTAATGAAGACACGAATGAAAATAGAGGTGAGCAGGAGGTTCCCCTAGACCTGCATCTGTGCACCAGCTCCGTAGTGAAGTCTGACTTGTACGAGGAGCAGTTCTCCCATCAGTTCGAAGTCACTGTCAAGCAGGAGCCCGCGGATCATGCGTTTAGTGATTCTGAAAGTTCAACAGACTACGAACTGAAGCCAGAACAGAAGCACAACAGTGTTGCCGTTCTCCAGCCCAATACCTCCAAATTGTACATTAACAATAAGGACATATCGAGCATGATATCCGATCACATGGGCAAGCGGGAGTGCCAGATCTGCCAAAAAAAGTTCGTCACCAAAAACAACCTGAAACGCCATCTACTTATCCACACCCGGCATAAAGTAGAATGCAGCCACTGCTGTCGACAGTTCCTCAGTAAGGAGCAGCTCAGTAAGCACATAAGAAGATGCCACTGGTCGAACAAGCCGTACGAATGTAATGATTGTAAAAAAGTTTTTCGGTCTTCATCCAACTTGCTCCAGCATAAGCGTGTCCATTTGACAGTGAAGCCGTATACATGTGACGTGTGTAACAGAGGGTTTGCGATTAAAGCTAGTATGCTGAGACACCAAGGGAAGAGCCGGTGCAAGAAGCCCGTGGGACCTCTAATTTGCCAAGTATGCAATAAGGAGTTTCATCGTGAATACCTATTAAAGAGCCATCTGCGTATGCATACAACAGAGAAACCATTTCAGTGTGCCCTCTGCAGCATGAGTTTTAAGTATAAAAGCACTATAATTAGACATATACAGCTTCATAATAATCAGCGTCCGTACTCGTGTACGGTTTGTGGGAAAACGTTCACCCATTCCGGGCTGATCAAACCTCACATGAGGAAGCATACCGGAGAAAAGCCTTACATATGTCCAATATGCCAAAAAAGATTCTCCCACAAGCACAATATGCAGAGGCATGCAATAGGACATAACAAAATCAAGCATTTAGTCTGCGATGTCTGTCATAAGATATTTCCTAAGGAGAGTCGCTTGAAATACCATATGAGAACGCATATGGTGGATAAGAGACCTTTCAAATGCGAGTACTGCCCGAAATCGTTCTCCCACCGACAGAATATTCAACGACATTATAAAAAGAAGCATCCGAGTGTAATATTTGATCGGCCGGAGACCGATGCGAGCATAGCGACTATCATATGGCAGAGTGTGATGAAGAATAAGATGGCAACGGAGAAAGAGTATATAATTCCTGAGGCTGACTGGCCTGATGGAGAACTTGAGAATAAAATTAAGGAAGAATAA
- Protein Sequence
- MSSEVVDVKSDPGMECFDSSEKPVSSSQYVETAPQPEFVNIKVEINEDTNENRGEQEVPLDLHLCTSSVVKSDLYEEQFSHQFEVTVKQEPADHAFSDSESSTDYELKPEQKHNSVAVLQPNTSKLYINNKDISSMISDHMGKRECQICQKKFVTKNNLKRHLLIHTRHKVECSHCCRQFLSKEQLSKHIRRCHWSNKPYECNDCKKVFRSSSNLLQHKRVHLTVKPYTCDVCNRGFAIKASMLRHQGKSRCKKPVGPLICQVCNKEFHREYLLKSHLRMHTTEKPFQCALCSMSFKYKSTIIRHIQLHNNQRPYSCTVCGKTFTHSGLIKPHMRKHTGEKPYICPICQKRFSHKHNMQRHAIGHNKIKHLVCDVCHKIFPKESRLKYHMRTHMVDKRPFKCEYCPKSFSHRQNIQRHYKKKHPSVIFDRPETDASIATIIWQSVMKNKMATEKEYIIPEADWPDGELENKIKEE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -