Basic Information

Gene Symbol
jarid2b_1
Assembly
GCA_947086405.1
Location
OX352287.1:5363106-5378741[+]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 4e-19 9e-16 58.5 0.0 6 89 743 823 739 823 0.93
2 2 0.17 3.8e+02 2.0 0.1 1 28 829 859 829 863 0.77

Sequence Information

Coding Sequence
ATGTTGCCCAGAGGGAAAGCGTGCGTTCAACGCAAATTCGCACAGGGTGCGCATATTCCATCCAATCACCAAAACACGATTACTACTCGAACCGAAGTGCAAGCCGAGCCCATCAAACCGAATATTATACATAACAATTCAAGTGCGAAGAGCCTGTTGGATCTGGTGGCCTTTAACAGTATACACATTCACCGACAACCAGTGGTGCTTCTGGAGAGGTTAGAGGACCAAATCATAGAACCAAATGCAAATGCAAACGCTGCCCCAAACGAGCCTGAGCCAGTGAACAATGGCACTTCACCTACTACAGCTGCAAGAAAAACGAGATCGAACAGTTTGCCTAAAAACAGCTCAATGTGCCTGAGGTCAAAAGCGAAACGTAAACCAAAAACAAATACGAAGCGTAAACATGGAGATTCAGACGATGATGAGACCCCTCTGGAATACTACAGGGGTAACCCGAAAATTAACATTGAACCTCTAGGTCAATCAAGTCCTGCAAAGCAGAAACGTTTGTCGGATCCAGCGGATCCTAACTTAAGCCCAACGTCTGATTCGACATCGCAACTAACCGCCAACCATCCGGCGCCAGAACAGCAACATTTACCAGCGACCGTGGCATCAAGACGGCGTATCGGTACTCCGTGCTCAAACCCAACGACAACACAACCACCTGTGGACCATCCGATACAAGAAGAGCAACATTTACCGGCGATCGGGGCCTCAACTCGGCGTATCGGTAAGAAGATTTATCTTCAATATCAAGAAAGTACATCTAAGTCAACATCCGATGCAATAGTTCAAAAAACTGACTACCAGTCTGCAAACGAAAAACTACATTCACCGGCGTCCGTGGCATCAAGACGGCGTGTCGAGATACGATGCCCTATAGAAAACCGCCGAAATCTTAGGGACGCTTACTATGCGCCAACATACGTCAAAGACAGATTCTGCAACTCATGCAGTAGCTGTAAAAGACTACTGAAATTAGATGAACTGTCTAAGCTTATGCGAATACCGCATGATTTGAATGATGATGTTTATGAATTTGATGCCGAAAGGGAGGCCAGTGAATCTTTGCCATTGGCTTACCGTAAGCGGGGCAAGAAACAAACCATTGAGATATTGGAATCCAGTCATGAAAAAAGTAAATATTTCGATTTTATGCCCCCGGAACATTCTAACTACGTGCTGAAATTGCGGTTGGTTCAGGTACCAGATAAAGAAAAACAGACGATCATACGAGCCAGTGTTGTACCAAGAACTCAAAACACCCAAACGGAAGACATATATTTGGTCGAAAACGAAGAACTCGTGGACGGCCTAATTCGTTTTATGATAGAAACTGTTACAAAACCTCTGAGCTGTGAAGTACCACACTCAAGAATCGTACAAAATGAGGTTGCCAACCGAAAGCCTTCGAGGATCCCGATGCGACAAGAGTTATTAGGCCGAATTCCCGTACGAAATGAGGCCCCAACTGAGAACCGCAGGACGGCTTCGTGTCGCCATAACAACCCAGGTCTAAATGACCGGCAGAAAAAAGCCCCAACTGTAAACAACAAGTCTAAGCCTTGTCAACATAATAGAGGCACAAGCGGCCCACGAACTGGGGCCTCAACCGCAACAAGCAAACCTACAGGGGCTTCTTATACTAAAAAGACCCAGAGCTCAAAAAGCCTACAAAAAGAGACTGAACTCGTAAGCAGCAAGCCTACAAAGACCTTTAATTCCCAAAATACGGCAGGCCCAAGTGGCTTACAAGACAAGGCTCCAGGCTTAATTAGCAAGCCTACAAATACTCTTAATCCTCAAAGTGAACGCCGGGAGTCCGTAGACACAGTTATTTCTATAGGAAGTTCGAGCCCTATCAAAGAAACGAATAATGGACAATTGACTCAAAGTGCTAGCTCAACCAGGGCAAAAAGTAACATACAAGTAAAATCCACGACGAAGGAGTTAAAGAATATGATGGTTTTGCCTAAGAGTTTGACGTCGGGTGAGGTTGTAGAAGCGCCAACCTTTTATCTCAGCGAGACGGAATGTTGTGATCCGATTGCATTTTTCGAGAAGATTAAGCCATATGTTGGAAAGTTCGGAATTTGTAAAGTGGTAGCGCCAAAGAGTTTCAAGCCAACCTGCCTTCATAGCGAGGAGATAAAGTTTAACGTTACTAACCAATATATTGCGAGGTTGTACAGCCGATGGGGTCCTGCAGCGCGGGAGATGACCGCTATCAAAGCGTATCTAGCCACTCAAAACGTGCAATTTTCCAGAGCACCTATGCGGGAAGGTTTGGAACTGAATTTGCCGAAGCTGTACCATATCGTACAACGCAACGGCGGCCTGCAGCAGGTGATGGACATGAAGCGCTGGAGCCGCGTCGCCGAGGAGATGAAGCTGACCAAGTGCTCTGACCCAGAGAAGACGCTTGACGAGATATACATCAAGTATCTGGTGCCATACGACATGTTATCCAATCAGGAGCGACAGCAGATAATGAAGTCTGTTGAGAAATTCTGGAACAAGAAGAACCAGAAGCTCCTGGACTGGGCTAACAACCCTCTGCACCGGCAGAAGAAACTGCTCGGCGAGTCCGACTCTGAGTCGTCTGATGACGACTATGAAGATGCGAAAGAGTCTCCCGAGGTCGCCACCGCTCTGAAGAAGGCGGAGGATTGCGTCATGCAGGGCAGACTGATGAACTTATCGTCTTTCAAGAAGGTGGCGACCAAAGCAATGGCGGTGAACTTCCCCGACTCCTCGACCACGCGCGAAGTGGAGTCAGAGTACTGGCGGCTGGTGCTGCTCGGCACCGAGCACGTGTGCGTCAACTCAGCGTCCATTGACGCGGGCGACGGGCGCTTCGGCTTCAGTACGAACGAGACGGACGCATGCTGTCGCCACCCATGGAACCTGAAGATGCTGAGCCAAAACCAGCAGAACGTGCTTTCTCCGCTCGGCCCCGTGCTGGGTGTCACCTTGCCGACGTTCCACCTCGGCATGGCGTTCTCGACGAGCTGCTGGCACCGCGACCCGCACATGCTGCCGTGGGTGGAGTATCTTCACAACGGGGCTACCAAGATATGGTATGGCATCCCGAACGAGCAGAGCGCCAACTTCCGAAAGGCAGTGGAGACGCTGTGCCCGACGTCGTGCCAGAACAAGTCCATTTGGCTTCCGTCGGACATCACTATGATCCCGCCGAACTTGCTACGCGAGCACCACGTCTCGCTTTCGAGGGTGGAGCAGAAGCCAGGAGAATTCGTCATAGTTCTCCCGATGGCATATTCGTGCTCAATCTCCACCGGCTACACAGAGTCGGAGAGTGTGTACTTTGCGACCAAGTCCTGGACCAAGACCATGCATCAGGTGTTCCAGGAGCTGCGTGACAGCTGCGAGCCGACTACCTTCTCTCTAGAGCAACTGCTGATCGCGCTGGCGCGGGACTCGAGCGTGCCGCTTAGCGTGCTGCAGCAGGTGCACGCCAGCCTCAGCACCATAGTGGACGAGGAGCGGAGGAACCGCGACCGCTTGACGAAGCTCGGGGTGCAGAGTCGCATAATCAACCTGGCAAGGCGGCCGGGCACGTGGAACGTGCGCGAACAGCACGAGTGCGAGATATGTCGTACCACGCTCTACCTGTCCATGGTGTTCGGCCTGATCGGCAGGAAGTCCTCCGTGTGCCTGCAGCACGCCCTTCGTCTGCTGGAGATGCCCAAGTACAAGGATCACGACGTGTCCAAACTGGAGATGATCATCTTCTACACTAAGGACAAACTGATGGACATAATAAGCGATGTACAGACACGTCTGTCACATTAA
Protein Sequence
MLPRGKACVQRKFAQGAHIPSNHQNTITTRTEVQAEPIKPNIIHNNSSAKSLLDLVAFNSIHIHRQPVVLLERLEDQIIEPNANANAAPNEPEPVNNGTSPTTAARKTRSNSLPKNSSMCLRSKAKRKPKTNTKRKHGDSDDDETPLEYYRGNPKINIEPLGQSSPAKQKRLSDPADPNLSPTSDSTSQLTANHPAPEQQHLPATVASRRRIGTPCSNPTTTQPPVDHPIQEEQHLPAIGASTRRIGKKIYLQYQESTSKSTSDAIVQKTDYQSANEKLHSPASVASRRRVEIRCPIENRRNLRDAYYAPTYVKDRFCNSCSSCKRLLKLDELSKLMRIPHDLNDDVYEFDAEREASESLPLAYRKRGKKQTIEILESSHEKSKYFDFMPPEHSNYVLKLRLVQVPDKEKQTIIRASVVPRTQNTQTEDIYLVENEELVDGLIRFMIETVTKPLSCEVPHSRIVQNEVANRKPSRIPMRQELLGRIPVRNEAPTENRRTASCRHNNPGLNDRQKKAPTVNNKSKPCQHNRGTSGPRTGASTATSKPTGASYTKKTQSSKSLQKETELVSSKPTKTFNSQNTAGPSGLQDKAPGLISKPTNTLNPQSERRESVDTVISIGSSSPIKETNNGQLTQSASSTRAKSNIQVKSTTKELKNMMVLPKSLTSGEVVEAPTFYLSETECCDPIAFFEKIKPYVGKFGICKVVAPKSFKPTCLHSEEIKFNVTNQYIARLYSRWGPAAREMTAIKAYLATQNVQFSRAPMREGLELNLPKLYHIVQRNGGLQQVMDMKRWSRVAEEMKLTKCSDPEKTLDEIYIKYLVPYDMLSNQERQQIMKSVEKFWNKKNQKLLDWANNPLHRQKKLLGESDSESSDDDYEDAKESPEVATALKKAEDCVMQGRLMNLSSFKKVATKAMAVNFPDSSTTREVESEYWRLVLLGTEHVCVNSASIDAGDGRFGFSTNETDACCRHPWNLKMLSQNQQNVLSPLGPVLGVTLPTFHLGMAFSTSCWHRDPHMLPWVEYLHNGATKIWYGIPNEQSANFRKAVETLCPTSCQNKSIWLPSDITMIPPNLLREHHVSLSRVEQKPGEFVIVLPMAYSCSISTGYTESESVYFATKSWTKTMHQVFQELRDSCEPTTFSLEQLLIALARDSSVPLSVLQQVHASLSTIVDEERRNRDRLTKLGVQSRIINLARRPGTWNVREQHECEICRTTLYLSMVFGLIGRKSSVCLQHALRLLEMPKYKDHDVSKLEMIIFYTKDKLMDIISDVQTRLSH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-