Etag007978.1
Basic Information
- Insect
- Erynnis tages
- Gene Symbol
- -
- Assembly
- GCA_905147235.1
- Location
- LR990098.1:1202056-1205487[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0061 0.36 11.4 1.1 1 23 250 272 250 272 0.96 2 10 0.12 7.2 7.3 0.1 3 23 299 319 298 319 0.97 3 10 0.003 0.18 12.4 0.8 2 23 340 361 339 361 0.95 4 10 0.044 2.6 8.7 1.7 2 23 366 387 365 387 0.96 5 10 5.6e-05 0.0034 17.8 2.2 1 23 394 417 394 417 0.94 6 10 0.0016 0.096 13.2 1.4 1 23 423 446 423 446 0.96 7 10 5.8e-05 0.0034 17.8 2.7 1 23 452 475 452 475 0.98 8 10 0.0036 0.21 12.1 4.7 1 23 481 503 481 503 0.98 9 10 2.6e-05 0.0016 18.9 2.0 1 23 509 531 509 531 0.98 10 10 2.1e-06 0.00013 22.3 0.9 1 23 537 560 537 560 0.97
Sequence Information
- Coding Sequence
- ATGAGTCTAAACAATAAAAAGGGGCCTGTTTACGAAGCGGGCTTATGCAGATGCTGTGGCGCCACGAAGAGGTGTCGCGTGTTGAACGTGGAATACCATTGGCAGGGGCAGAAGGAAATATACTCCGAAATGTTCTTGGATTGTTTTGGTTTAGTGCTATCATACTTGGATAATGAGGAGCAGGAGCGTCTGATCTGCGCCACATGTGTCTCCCGTCTCCGGGAGGCGAGCAGCTTCCGACACCAGGTGCTGCAGTGTGAGGAGAAGCTCCTCCGAGCGAGCATTCAGTTGCACCATGAAGGCACAGATGTATCCAACACTGTGAAGGACGAAGCCAGTGTGGAAGATGAGAAGCAAGAAGCGTTAATTGAGATTAGGCTGGACAATGATGATGATATGGACCATTTAGGTTATGACAGTGGAGATCCAACCGTTGAAGACACCAAACCGGAAATCAAAGCCAAAAAACCCCCAAAAGAGAAGCGTGCCAGAAAAACTTTGAGCACTGTAAAACGGAAGAAGAAAGTGACAGACTGTGATGTGGAGAATGTGGAGAAGAATCAAATGCTGCAAGACATGGAGAACATGTATGATAAGTTGAAAGAAATACAGACAGTTGAATCAGAACCGCCTTACAAGAAGCCAGTAGAAAGAAAGCAACTAGACAACAGTATGCTGTCCCTCCATAATCTAAGTGTTATTGTAGAGAATTCCTATGTATGCCCGTTCGACACGTCCTTCAGCGACTACTACTGTATATACTGCAGGCTGAAGTTCACAGACCCCACCAAACTAAGAGACCACACGGCCACACACAATCCGACAGAATTCAAAACCGTTTTGAGGAACTCGGGATCGAACAAGAAAGTCCAAATTGACATATACCGGGTCGACTGTCGTTTGTGTCCAGAGAGTATTGTAGACATTGACAGTTTTAAGCAGCATGTAAGAAATCATGGGAAAACCATACACAGAGTACCAGATGACTTTTTGAAATTCCGCTTGACGGACAGTCTGAGTTGCTTAGAATGTGGCAACAGCTTCGGTTTCTTCCACGCGCTGAAGAAGCATATGGCGGAGCACTTCGGCACGTGCATATGCGACATATGCGGCGCTCACTACTTCGAGGAGCGCATGCTGGTGCTCCACCAGAAGACCCACCGGCGGTCGGACGAAAGCTACACCTGCAAGGAATGCGGTAAGTCGTTCAAATCCAAGTACACGAGATACATCCACGTAGCGCGCACGCACACCAAGGAGGCGGCCTACCAGTGCAACAAATGCGACGAGGTGTTCTTCTCCTACATGCTTCGGTACCGACACATGATGCAGGCGCACGGGGAGGAACGCAAGTACCAATGCGAGCACTGCGACCGGGCGTACGACAGCCGCAAGTCGCTGCGGGAGCACAACAGGCGGTTGCACCTCAAAATACTGAAGCATCAGTGCGACCTGTGCGACAAGAGGTTCTATCTGCCGTGCCGGCTGAAGGAGCACATGTCCAGCCACACCGGCGAGCGGAACTACAGGTGCGAGTGCTGCGGCAAGAGCTTCCCCCGGCTGCGCGGGCTGAAGGTGCACATGCAGTCGCACGGCGCGGACAAGCGGCACAAGTGTGCGGTGTGCGGCGCCGCGTTCACGCAGAACGTCAACCTAAGGACGCACCTGCGGAGGCAGCATCAGGACTGCCAGTAG
- Protein Sequence
- MSLNNKKGPVYEAGLCRCCGATKRCRVLNVEYHWQGQKEIYSEMFLDCFGLVLSYLDNEEQERLICATCVSRLREASSFRHQVLQCEEKLLRASIQLHHEGTDVSNTVKDEASVEDEKQEALIEIRLDNDDDMDHLGYDSGDPTVEDTKPEIKAKKPPKEKRARKTLSTVKRKKKVTDCDVENVEKNQMLQDMENMYDKLKEIQTVESEPPYKKPVERKQLDNSMLSLHNLSVIVENSYVCPFDTSFSDYYCIYCRLKFTDPTKLRDHTATHNPTEFKTVLRNSGSNKKVQIDIYRVDCRLCPESIVDIDSFKQHVRNHGKTIHRVPDDFLKFRLTDSLSCLECGNSFGFFHALKKHMAEHFGTCICDICGAHYFEERMLVLHQKTHRRSDESYTCKECGKSFKSKYTRYIHVARTHTKEAAYQCNKCDEVFFSYMLRYRHMMQAHGEERKYQCEHCDRAYDSRKSLREHNRRLHLKILKHQCDLCDKRFYLPCRLKEHMSSHTGERNYRCECCGKSFPRLRGLKVHMQSHGADKRHKCAVCGAAFTQNVNLRTHLRRQHQDCQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -