Etag007934.1
Basic Information
- Insect
- Erynnis tages
- Gene Symbol
- SCRT1
- Assembly
- GCA_905147235.1
- Location
- LR990098.1:1052841-1054613[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0086 0.51 10.9 2.5 1 23 28 50 28 50 0.98 2 14 0.013 0.77 10.4 0.0 2 23 71 93 70 93 0.91 3 14 0.024 1.4 9.5 0.4 2 23 114 136 113 136 0.91 4 14 0.00034 0.02 15.3 3.0 1 23 141 164 141 164 0.97 5 14 0.00051 0.03 14.8 0.7 2 23 195 217 194 217 0.96 6 14 2.9e-05 0.0017 18.7 0.9 1 23 257 280 257 280 0.98 7 14 0.17 10 6.8 0.0 3 23 310 331 308 331 0.92 8 14 0.00064 0.038 14.5 0.2 2 23 353 375 352 375 0.93 9 14 1e-05 0.00061 20.1 1.1 3 23 382 403 380 403 0.95 10 14 0.00039 0.023 15.1 6.2 2 23 408 430 407 430 0.94 11 14 6.2e-05 0.0037 17.7 2.0 1 23 435 458 435 458 0.96 12 14 4.8e-06 0.00029 21.2 4.3 1 23 462 485 462 485 0.97 13 14 0.00077 0.046 14.2 1.3 3 23 493 513 492 514 0.94 14 14 0.00014 0.0086 16.5 0.5 1 23 519 541 519 541 0.98
Sequence Information
- Coding Sequence
- ATGTTGTCTCAGAGACGGAGGGAAAACTTGAGGATACTGGTCAACAACACGTCGATAGTACCGTTTGAATGGCGCGGCAAGTACATATGTTTCTACTGCGACAATGGATTCGAAGACTACCACGAATTCAGGACACACGCCAAGTCTCACGGTCTACTCGAGAAGATAACGAAGGGTGGTGATGACATAAAAATAGACATATCCGACATCAGTTGTGACGTTTGCCACGAAAACTTCGGGACTGTAGATGATCTTATAGACCATTTGATAGACGGACACGACTTGGAATACGATCAGACCGTGGACATGCCGTATCTGGAGTATATGCTCGCTGACTCCCGATGCCAGTTCTGTGATCAAGAATTTCCAACTTTCGGCAAACTCTCTGATCACATATTCGAAGACCATCCCCGGAGTTGCTTCACGTGCGATAAATGCGGGCTCACGTTCAACTTTCACAGAGACTTGTATTCTCACATCAAGAACGACCATCGGCAAAGCGGATACATGTGTGATAGGTGCTCAGATATCTTCGACTGCCAAGACATGCTGGACAAACACAACTTAGTCTTCCATTACAAGCAGTGCGAAACTTGCAACTTGAAGTTCCCGACCGACAAAGGCCTGAAAAAGCACATGAGTGTGGAGCACCCGAATCGGAAGATCGAGCTCGTGCCGAAGGTGACGAAGCTGCTGCTGAAGAAACGCCAAAACATTGCAACGGTCCTGAACATGACCACCGTCATACCTTTCAAGTTCTTCACCAAATTCACCTGCTTCTACTGTCCCAGAACGTTCACGCCGTTCGACGACTTAAGGATCCATACAATGACGGAACACCCCTCTTGTGACGTCAACTCGAAACCCATAACGAGGTACAAGGAAAAGGAGAACGCAGTCGCGAGAATTGACATCAGCTTCCTAGCCTGTAAAGTGTGTGGTGTCACGATCCCAGACCTGGGTCTACTGATCGACCATCTGATCGAGAAACACAACGCGAAATACGACAAAAACGCCACCGACTGCTTCGAGCCGTACAAGATGGGTGACAAAATCCCGTGCCCGCACTGTCCTTCAGTCTTCCGATACTTCGCCACTCTAACGAGGCATGTCAACGCGGAGCACAGCAGCGGGAAGGTGATCTGCAATTACTGCGGTCGCACCTTCAGGAAGCACACGAATTTGTTCGTGCATTTGAGCATCGCGCACGCCGACGGCTGCTCCTGCGACGAATGCGGGCTCCACTTCAGGAACCAGTCGTGTCTGGCGCGCCACCAAGCGAAGAGGCACGGTTTGAAGCAGTTCCAGTGTCCTAAATGCCCGGAGATGTTCGAATCGCAGTACCACAAGTTTCGACACATGATTCAAGTCCACGACATAGGCCACAAGTGCGGTCACTGCGGGCGGATGTTCACCAGGAACTCGTTTCTCAACGATCACGTCAGACGCGTCCACACGAAGGAGAAGGACGTCGCGTGCGCTCTGTGCGATCAGAAGTTCTACGACAATTACACGCTGAAGCTGCACCTGATCAAACATCACGGTGACAGGAGGTTCACGTGTGAGGTTTGTGGAGAATACTTTCTCCGGCAGAGGAATTTGGACCAACACATGGAGACGCATAAGAAGGAAGGATACGAAGAATACGAGGAAATCGAGTACATTGAAGAGGAGTTGGAGGGAGAGGGAGATGTGGAAGAGATAGAGATTGAGGAGATAGAAGCTGGGGATGTAGGAATGGAAGTGGGATATGTTGAAGAGTTTCGAGATTAG
- Protein Sequence
- MLSQRRRENLRILVNNTSIVPFEWRGKYICFYCDNGFEDYHEFRTHAKSHGLLEKITKGGDDIKIDISDISCDVCHENFGTVDDLIDHLIDGHDLEYDQTVDMPYLEYMLADSRCQFCDQEFPTFGKLSDHIFEDHPRSCFTCDKCGLTFNFHRDLYSHIKNDHRQSGYMCDRCSDIFDCQDMLDKHNLVFHYKQCETCNLKFPTDKGLKKHMSVEHPNRKIELVPKVTKLLLKKRQNIATVLNMTTVIPFKFFTKFTCFYCPRTFTPFDDLRIHTMTEHPSCDVNSKPITRYKEKENAVARIDISFLACKVCGVTIPDLGLLIDHLIEKHNAKYDKNATDCFEPYKMGDKIPCPHCPSVFRYFATLTRHVNAEHSSGKVICNYCGRTFRKHTNLFVHLSIAHADGCSCDECGLHFRNQSCLARHQAKRHGLKQFQCPKCPEMFESQYHKFRHMIQVHDIGHKCGHCGRMFTRNSFLNDHVRRVHTKEKDVACALCDQKFYDNYTLKLHLIKHHGDRRFTCEVCGEYFLRQRNLDQHMETHKKEGYEEYEEIEYIEEELEGEGDVEEIEIEEIEAGDVGMEVGYVEEFRD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -