Eten026856.1
Basic Information
- Insect
- Eristalis tenax
- Gene Symbol
- prdm10
- Assembly
- GCA_905231855.1
- Location
- HG993125.1:91849082-91852980[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 6.1e-05 0.0094 16.9 0.2 2 23 480 501 479 501 0.95 2 11 0.00029 0.045 14.8 1.1 2 23 534 555 533 555 0.96 3 11 0.00081 0.12 13.4 4.7 1 23 575 597 575 597 0.98 4 11 2.7e-05 0.0041 18.1 0.5 1 23 608 630 608 630 0.98 5 11 0.0028 0.43 11.7 2.1 1 23 635 657 635 657 0.97 6 11 0.34 51 5.2 7.8 1 23 663 686 663 686 0.97 7 11 0.018 2.8 9.2 2.3 1 23 691 713 691 713 0.98 8 11 0.0002 0.03 15.4 2.8 1 23 719 742 719 742 0.98 9 11 2.2e-05 0.0033 18.4 0.6 1 23 795 818 795 818 0.97 10 11 0.00093 0.14 13.2 2.2 1 23 840 863 840 863 0.96 11 11 0.024 3.7 8.8 3.6 2 23 895 917 894 917 0.97
Sequence Information
- Coding Sequence
- ATGGCAGCAGATATGAATACCTCAGATGCCATGGAAACAAAGAATTACTTGTACAGAGGCTTTCAAAGGACCAGTTCGTACGATCCGAATATGTGCACAACAGCGGCACGGTTCAGTCCGTTCTACGGGAAAGGAAATACTACTCAAATTACTGATACAAGTACAAGCGGTAGCAAGAATCTTATTTACATCAAATCATCTGATGAAATTACTGCCGATTCAAAATCATCAAATGAACTGGATCAGGGTGACTCTTCGACTAAAATGCAGAATAACTCCTACTTATCATATAACAGCGAGATTCTGATTGAAGAACAAAATACCAATGTTGAGGTATTTGTGCAAAATGAGACCTTTACCAAAGAGCGGGAAGGGCCTTCCATTTCCAGTAGATTTGATTTCGATCAGCAATCTCATCGGGTTGAAAACGTAATGGACACCGAGCCTATAACAACTGAAGTTGTTTTGCATCGATCTCCTAATGGTCATCTTTATCAAGATTTTTATGTTGCTAATGAAAATGGAGCTGGCGGGGAAATTGTTGAGTTGGTTCCTATAGACGCCAACGACAGAAATCATTTAGAAGGGATAAACGAAAATGGATTCTCTTTGCAACCATTTGATTTCCCTAATGAATGTAATATGGAGGCTTTAGGTGGCCGTTTACACGATGAAAATCAGGAGAACGAACGCAGGAAACGAAATTTAGCTGCTCAGATATTGGAGAGGGAACAACAACGGATATTGTTAGAGAGCACAATGTCACCACTATTGGCCGCTGTTAATGATATAACTCAAAGAGATGCAGAACTCCTTTCCTACCTTAATCAACATGTCGACAAAGAAGACAAAATCGTTAACAATTTGCCAAGTAATGATGAATTCCGTTTCTTCAAGAACAATGCAAAAGAATCATCAGAGGATGACGATGATGACTATTTACTTGTTTCCGATAAACCCGTGCAGAGCCGAGCAAGAGCCACTCTTCCCACTAACTATCTCTATTTTGGAGCCGTTAAAGCTGATACGAATGAGCCCTCCATCTATGCTAAAAAGGCAATTCCCCAGCGAACGAAATTCGGGCCATTCGATGGAGAAATTCGCTTCATGAGTGACATTTGCATTAATATCCTCCGTTCACAACACCCACGCTACTATCCACTGCTCTTGGTTGGGAATTCAAGAGTACTTGTTGTCACCAGTGAGGAAACTTCCAATTGGATGCGTTTTGTTCGGTTGGCTCAATCGTACGCTGAACAAAATTTGCAAATAATTGAAGAAGACGACCGGATATATTTTAAATGTAATCGTGATATAAAACTAAAAGAAGAACTGCGAGTGGGTTATCATAGTACATATGCAGTCAAGTATAATCTTCCGATTTTGGAGCCATCAGTGGAGGACAATGAAAATAAATTCAAATTGGAAAACCCCTGGATTTGCTTCGAATGTGATAAAAGGTTCCCGACATCGCAGGAAATGCAAAAACACTTGGAGGTTCACGATGTTGAAGATGCCTCCTGTATCATATCGAAGAGGAAAATCAAAAGGAAGAGAAGAAAGTTCAAAAAACTCTCAGAGTTGCCTCGAAATTCTAGTAGGTGCTTGATTTGCTTTAAAGTTTTTATGACAAATGCGAGTCTAAAGAAGCACTTTGCGACGCACTTGGCAACCAAAAAATCAAGAACCAAGATGTCTTTGAAGGCGCCAAAACGACCACAATATCGATGTCAGACATGCAATAGGAAATGTTCTTCGGAAGATAAATTAAAGATCCACCAACAAAATCATTTTAAATCCACCAACAATGAAAGCAAGCCCCACAAATGTCCTCAATGTGATCAGCGATGTGCAACTCCCACGGCATTGGCTGCTCACATCCGTGGTCACACAAATCGTCTGTATTCATGTGTATACTGCCAACAGACCTTCAAATACGTTATGGACTTCAAAAAGCATGTTCTCCAACATTCCGTTGATGGACTTTATACTTGTGTGCATTGTCATAAGAAATACCAGGAGTATCATCTGGTGCGGAAGCATGTTCGAATTTTTCATCCAGCAGTTAAGTATCCGTGCAATGAATGCGATCGTTTGTTTCTTCACATGAGCTTCTTGCGTCGGCATAAGGCAACGCATGCGAAAAAGTCAAACTTCCAATGCTTTCAGTGCGAGCAGAAGTATGTCAGTAATGAGGAACTTCAGCATCACATAAATACGTTCCACAAAACCAAGAAGAAATCGAAAAAGGAGCCGACAAAATCGACCGTGTCCCCGGAGAACAAGGAACCGCAGTCGTCAACACCCGTATTGAGAGAAAAACAATCAACGAAACCCGTAAAGAAGACGTCGTCAAGCTCAATTGAATACAGGCAATTTCAGTTTAAATGTGAAGACTGTAAAGTAGGTTTTAAACGACGAGGCATGCTTGTCAATCATATGGCGAAACGTCACCCGGAGAGGGATATAGACTTAATAGAGGATTTAAATCAGCCTATTGTTAAAATACAAACAATATTCAATTGCCCGCATTGCTCGAAAATATATAAAAACAATGCTAAGCGGAAAGCTCACATTATAAAAAATCACCCGGGCTTGGAAGTCCCACCATCGTTTCGTAGTAATCCGATTTCGAATGATGTCAACGTGCAAACTGTTGGCTGCATAAAGGCTGATGTACAGAAGTGTCATCTCTGTTATAAGCAGTACGCTTCTCGGACACGGCTGCTTTCGCACTATCGGAAGGCCCATCAAAATGAAAAAGTACCCGAGATATCTGTGGTGGAATCTCCACCTGCTCAAATTCTCATTGATGAACAACGCACAGTGGAAATGGATATTTATAGACCTCCTGTGTCACCAGAGAACAAGCTACTAAAATTGTCTTCCGCAGCACTTGAATTGTCCAGCATTGAGGATAGAAAATATTTCGATTTTCTCAACGAACGGGCAGACAAGGGCAACTATAAAATAGTAGCAAGCGAGTTTGGAGAGACTTCATCGAATACAGAACTAAATCGTTTACCGGAATTGTTTGATGAGACAATTGCATGTATTTGA
- Protein Sequence
- MAADMNTSDAMETKNYLYRGFQRTSSYDPNMCTTAARFSPFYGKGNTTQITDTSTSGSKNLIYIKSSDEITADSKSSNELDQGDSSTKMQNNSYLSYNSEILIEEQNTNVEVFVQNETFTKEREGPSISSRFDFDQQSHRVENVMDTEPITTEVVLHRSPNGHLYQDFYVANENGAGGEIVELVPIDANDRNHLEGINENGFSLQPFDFPNECNMEALGGRLHDENQENERRKRNLAAQILEREQQRILLESTMSPLLAAVNDITQRDAELLSYLNQHVDKEDKIVNNLPSNDEFRFFKNNAKESSEDDDDDYLLVSDKPVQSRARATLPTNYLYFGAVKADTNEPSIYAKKAIPQRTKFGPFDGEIRFMSDICINILRSQHPRYYPLLLVGNSRVLVVTSEETSNWMRFVRLAQSYAEQNLQIIEEDDRIYFKCNRDIKLKEELRVGYHSTYAVKYNLPILEPSVEDNENKFKLENPWICFECDKRFPTSQEMQKHLEVHDVEDASCIISKRKIKRKRRKFKKLSELPRNSSRCLICFKVFMTNASLKKHFATHLATKKSRTKMSLKAPKRPQYRCQTCNRKCSSEDKLKIHQQNHFKSTNNESKPHKCPQCDQRCATPTALAAHIRGHTNRLYSCVYCQQTFKYVMDFKKHVLQHSVDGLYTCVHCHKKYQEYHLVRKHVRIFHPAVKYPCNECDRLFLHMSFLRRHKATHAKKSNFQCFQCEQKYVSNEELQHHINTFHKTKKKSKKEPTKSTVSPENKEPQSSTPVLREKQSTKPVKKTSSSSIEYRQFQFKCEDCKVGFKRRGMLVNHMAKRHPERDIDLIEDLNQPIVKIQTIFNCPHCSKIYKNNAKRKAHIIKNHPGLEVPPSFRSNPISNDVNVQTVGCIKADVQKCHLCYKQYASRTRLLSHYRKAHQNEKVPEISVVESPPAQILIDEQRTVEMDIYRPPVSPENKLLKLSSAALELSSIEDRKYFDFLNERADKGNYKIVASEFGETSSNTELNRLPELFDETIACI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -