Basic Information

Gene Symbol
-
Assembly
GCA_905231855.1
Location
HG993128.1:1581748-1591873[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 22 9.3e-07 0.00014 22.7 1.5 1 23 95 118 95 118 0.97
2 22 0.00032 0.049 14.7 2.9 2 23 264 285 263 285 0.98
3 22 0.00027 0.042 14.9 1.4 1 23 291 314 291 314 0.97
4 22 0.077 12 7.2 3.5 1 23 326 348 326 348 0.96
5 22 0.15 23 6.3 2.5 1 23 370 392 370 392 0.97
6 22 0.00038 0.059 14.4 0.3 1 23 398 420 398 420 0.98
7 22 3.5e-05 0.0053 17.7 2.5 1 23 426 448 426 448 0.98
8 22 3.6 5.5e+02 1.9 5.2 1 23 454 477 454 477 0.95
9 22 7.6 1.2e+03 0.9 0.0 2 23 646 668 645 668 0.89
10 22 1.7 2.6e+02 3.0 0.5 1 8 700 707 700 722 0.88
11 22 0.036 5.6 8.2 1.0 1 23 883 906 883 906 0.97
12 22 1.9e-06 0.00029 21.7 1.2 3 23 924 945 923 945 0.96
13 22 0.11 17 6.7 1.2 3 23 1188 1208 1186 1208 0.96
14 22 0.5 76 4.6 3.5 1 23 1213 1235 1213 1235 0.97
15 22 2.1e-06 0.00032 21.6 1.6 1 23 1242 1265 1242 1265 0.97
16 22 0.00068 0.1 13.7 0.1 1 23 1271 1293 1271 1293 0.98
17 22 0.00096 0.15 13.2 6.2 2 23 1300 1321 1299 1321 0.97
18 22 1.8 2.8e+02 2.9 3.9 1 23 1345 1367 1345 1367 0.94
19 22 0.00076 0.12 13.5 3.4 1 23 1373 1395 1373 1395 0.98
20 22 2.4e-05 0.0037 18.2 5.1 1 23 1401 1423 1401 1423 0.98
21 22 1.1e-06 0.00017 22.4 2.3 1 23 1429 1451 1429 1451 0.98
22 22 0.031 4.8 8.4 2.9 1 23 1457 1479 1457 1479 0.98

Sequence Information

Coding Sequence
ATGCAACAAGCGGACGTGTGTGAGAATGACTACCGTTTTATTGAAGAAGCAGAGCTCAATGGAGAGGTCTACAAGTTGGAAAACCTGTACGAAGATAACATTATTCCTACAACTGCCCTCAAGGACGAAAAGGGCTCAGATTTCAACGACAACATAACGGATTATGATGGACAGTTCCCTATCGAAGATAATATTAATGTTGACGAGGCTCTCATTATAAAATCGGAGACAATATCCGCACCGCTGAATTTGAGTTCTAATGAAATGATTTCTGGCCCGCCATACCAATGCGAACAGTGTTCAAAAAGTTTCAAACGCAAGGCCACACTAAAAGCGCATGTAAATAAAGACCACAATGAAGATACTACTGCCTTATATCTCGACAATAAATACAAGACGAAGTCAAAGCTCAGTGCTTCCAGTCCATCGAATTCGATCTGTTCAGAATACACACCGGATCAAAGCTTTAATTACAAACTTCGAGGGACATCGACAAAATCCCAATATTGTACAAAGCGGAAAATCGAACGGGTTTCCAATAAGAACGACTGCGACAGCAGAAAGCCTTCAAAAGGTGTACAGACTAGTTGGAAACTAAACAATAACAATATTCCCAAAATCAAACAAAAATCAAAAGGTAACTTAGTATACAAGTGCACTGCCTGCGAGAAAATCACACACAATTACAACGATCACAGAAAGCACATTATAATACACCAAGCTCCACCGGACAGCCTCACGGAGACAACATCCCTGGAAAAGCTGAAGCAGACGCCAAGTGGTTTCATAAAGTGCGAGGAATGCGATTGTGTTTTTATGACCAAACGCGACTATACCCTTCATCAAAAGACCCACGAAGGTGGAGAAATTTTCCAGTGTGATGTATGCAATGCTATTCTATGTAATAGTTCCAGCCTAAGAAAGCACCAGATAAGGATGCATAAGAGGAAGTCTGCGGTGAAAAAAGAAAAGTCTTTCGAATGCATTATTTGTCATGAAAAATTTTCAGCACAAATTCTCATGACACACCACCGGAGAACCCACACTGAGGCGATCAAGAAATTGGAGGAGATGACAATCATCGAGAAACGAGAGGGAAAGACAGTCTATGTGTGTAAAATATGCGCGAAGACTTCAAAAAACAAATACCGGCATGAGGAACATTTAAGGATTCACACCGGCGAGAAACCCTACAAGTGTGAGCAATGTGGAACTGGTATTTCAACAGCCAATGCACTTGTACATCATTTACGACTGCACGAGAACGATAGACCATTCAAATGTGATATATGTGAGGCAACTTATCGGCATAAGAAGAGTTTGAAAAAACATTTAATAATCCACACTGGGGAGAAACGTTTCAAGTGCCGCTTCTGTGTGAAGAAGTTTGCCTTCAACTACACCCGAGCGGATCATGAAAGAAATTGTCACATAGATGAATCGAATGCACGTAAACAACGTCATCGTTCCAGCAAATCACAAAACAATAATGACAACGAGGATATAGAGGAAAGCGGTGAGATTTCGGAAAATATTTGTTGGGACTGTGAGGATACATTGCTGGGCTTCAACAAAAGTGTTGGTGGAGACAACGAAGACGAAGAGGAACCTGTTGTTGTTGATGACGACGAGATACTTTATAAAACCTTGGAAAAAACAAGACGCTTTCATCGGACGTCGAAAGAAATCGAAATCATTCAAATTGACTCATCTGATTCGGAACATGAGGAGCGGGTGATCATCCCAAAGGAAGACGACACTGTTAACGTCGAGGCCGCCAACATAGTTGTTGAGAGCTCAAAGGAAAGGAGTGTAATTGAAATAATGGACAATCAAGTTGCTGCAGATAGTAAGGAATCCTCCAATGAGACGGACTCTGATAGCTCACCCCAAAAGAATATATCATTCACAAGAGGTAATGTCGTTGAGAGTATGAGGTGTCCCCTGTGTCCCTACTTATCTGGTGTTGAGTACGAAGTGGTACTTCACATACGCCGCACACATCCCCACTACACCGGCGAGCATCTAAATTTCGAGCAAAAGGACGGTGATCCGATCCTTACAAGAAGGATAATATTCGTTCATTTGTGGACATTTTTTGAATGCAAAGAATGTGGGAAAATTCATGACAGGTTTTGGCCTCACAGAAAGCATCTTACCGCGCATGATCGAAAGAACTCGAAAAGCACACAACCAGCCAACTGCTCAACAGTTAACAATAACAAAGTATTTATCCCTCATGATTCCACGAAAACAGTTCAAACTTCAAAACGTGCCTTAGATTCGTTAGAAAACATTCATGATTCGAAACAACCCAAATTCGAAGAGCGGGTTCTGCGGAGAACTTCCAAAGACAATTCGACGGAAGCAAAAGGAAAACTCCCAACCGATTCATTGAAAACAGCGTCTAAAAAGCATCAGCGTGACGGTGCTAGTAAGAAATCAAATTCAAAGGGCCTACTTCGAAAGCAACAACTGCTGCAAGCAAAACGAGAAAAACGCTTGCAGAAACGCATAAAAGAAAAGAAACCAAAATCAAAGAAATCGCCCAAATCAGAGGCTATTCCAAAACCGACCTTTAAAATGCCTCAACTGCCTGCTCCTCGTGCCTCATCAGTAGTTAAGCAATTATCACACCACCCAAGGTTCACATGTAAGCTGTGTTCACAGACCATTAGCAGTTTTATAAATTGGAACATGCACATGTTGCGTACGCATTCCGCATTGGAATTCAAACAACCGGACGCAGCGGATAGCAATAATAATATGTGCAAAAAATGTGATAAAAATTTCTCCAACGCCTTCAACTTACGTGCGCATATTCGACTCTCACATCGACGTAAGAATCGTTTAGTTGAAATTAATGGAAATGACGACGAGGAGATCTGTCGTCAGACTCTGACACCAAAAAAAGAATCCAAAGAAGAAGCCGAAGACCGACTTAGTGTATCACTTCTCAATGGGGTGTCGAAAGCGCATAATATGCTAACCTCATCCAGTGCCTTATTGTGCAATGAAGAACTGGTCGACCAGATTCGGTTGTGTGCAAATATTCAAATTGACGCTCTGGATGATTTGCCGAAGTACGTATGTAATGTTTGTGAGCAAGGATTGGCGTTCTCATATAGGCTTCGAAAGAAAGGCGAAGAAACGGAAAAGAAACTTCGACAAGAACTTCTATTAACAAACTCAGACGAGGCATACTCTCTGGAAGAAGTGGACGAAGATGTCAAGGAAGATGCATGTTATGATGAAATGTGGATAGCTTGTGATGGAGATTTTAAACTTGATCAAGACGAATTAGGTGAAAACATTGGGGATGGAGTGGAGATTTTAGATATCGTACCTAAGGAAGAATGTGATGAAAATGAAGAGTGGATTTTACAACAAGAAGATTTCATTGAAACCAACGAATTAATTGAAGACGTTGGTATAACCAAGGTCGAAGACAATCTTATGGACATTTTTGGTACAAAAAGTTCGGCAAATGAGTCTAATGAGGCACAAGAATCTGAGTTACAGGATTTGACGGACAGGACACCGAGAAAGATGCAAATCAATTGCGTTACGTGTGGCGATGTATTTCAAAGTAGACAAGATTACTGTGAGCATATAAAAAGGCACGGCGACAAGCGGTATCACTGTGAGATTTGTGATAAATGGTTTAGTGTTCGCTATCGTTATGATACGCATAGGAAAAATCATAACAGCGAGAAGGGCGCCTTCCCATGTCCAAAATGCAGCAAAACTTATACAGTTCAGTGTAATCTAGAACGCCACATACGATCAGCACACAATGGAGAAAAGAGATTTCAGTGCGCCGAATGCGGAGCAAACTTTGGACGTGCAGATGTACTCAAGATGCACATGGTTAAGCACACCACTGAAAGAAACATCGAATGCGATATCTGTCAAAAGAAATTTAAAACATCACAGCACCTGCATTACCACAAGAAGAGCCATCTGCAGAAAGCAGAGAGACCCAAGAAGCCGGTGCGATTAAAATCCAAGCCGAAACCAAAAGTATATGAGTACATATGCGAGTACTGCGACAAGGTTTCCCTTCACAGGACAACACATTTAAATCACATACGAACGCATACCGGTGAGAAACCATTCAAGTGCACAACATGTGATAAGGCGTTCCGCACTACTCATGCCAGAAGTAATCATATGCTGCTGCACACAGATGAACGTCCACATAAATGCAAGGTCTGCAGTATATCATTTCGACAGACATCCCATCTTAAGTCGCATATGCTTATACATACAGGAGTGAAGGGCCATGTTTGTCAGTACTGCCAAAAAGCGTTTACAATGAAGAGCAATCTGATGGTCCACCTGAGGATGCATACCGGAGATATGCCATATAAATGTGATAATTGTCCACAGAGATTTCTTCAACTGAGTCGATTCAAACGACACAAATTGAGTCACATGGGTGAAGAAGCACAGCAAAAGGAGACTGGTAGCGGCAATGAAAACGAATTGGCAGATGACTACACTGACTCTCAGATCAATGTCTATGTTGAGGAAATCGAGAGCAGCTGA
Protein Sequence
MQQADVCENDYRFIEEAELNGEVYKLENLYEDNIIPTTALKDEKGSDFNDNITDYDGQFPIEDNINVDEALIIKSETISAPLNLSSNEMISGPPYQCEQCSKSFKRKATLKAHVNKDHNEDTTALYLDNKYKTKSKLSASSPSNSICSEYTPDQSFNYKLRGTSTKSQYCTKRKIERVSNKNDCDSRKPSKGVQTSWKLNNNNIPKIKQKSKGNLVYKCTACEKITHNYNDHRKHIIIHQAPPDSLTETTSLEKLKQTPSGFIKCEECDCVFMTKRDYTLHQKTHEGGEIFQCDVCNAILCNSSSLRKHQIRMHKRKSAVKKEKSFECIICHEKFSAQILMTHHRRTHTEAIKKLEEMTIIEKREGKTVYVCKICAKTSKNKYRHEEHLRIHTGEKPYKCEQCGTGISTANALVHHLRLHENDRPFKCDICEATYRHKKSLKKHLIIHTGEKRFKCRFCVKKFAFNYTRADHERNCHIDESNARKQRHRSSKSQNNNDNEDIEESGEISENICWDCEDTLLGFNKSVGGDNEDEEEPVVVDDDEILYKTLEKTRRFHRTSKEIEIIQIDSSDSEHEERVIIPKEDDTVNVEAANIVVESSKERSVIEIMDNQVAADSKESSNETDSDSSPQKNISFTRGNVVESMRCPLCPYLSGVEYEVVLHIRRTHPHYTGEHLNFEQKDGDPILTRRIIFVHLWTFFECKECGKIHDRFWPHRKHLTAHDRKNSKSTQPANCSTVNNNKVFIPHDSTKTVQTSKRALDSLENIHDSKQPKFEERVLRRTSKDNSTEAKGKLPTDSLKTASKKHQRDGASKKSNSKGLLRKQQLLQAKREKRLQKRIKEKKPKSKKSPKSEAIPKPTFKMPQLPAPRASSVVKQLSHHPRFTCKLCSQTISSFINWNMHMLRTHSALEFKQPDAADSNNNMCKKCDKNFSNAFNLRAHIRLSHRRKNRLVEINGNDDEEICRQTLTPKKESKEEAEDRLSVSLLNGVSKAHNMLTSSSALLCNEELVDQIRLCANIQIDALDDLPKYVCNVCEQGLAFSYRLRKKGEETEKKLRQELLLTNSDEAYSLEEVDEDVKEDACYDEMWIACDGDFKLDQDELGENIGDGVEILDIVPKEECDENEEWILQQEDFIETNELIEDVGITKVEDNLMDIFGTKSSANESNEAQESELQDLTDRTPRKMQINCVTCGDVFQSRQDYCEHIKRHGDKRYHCEICDKWFSVRYRYDTHRKNHNSEKGAFPCPKCSKTYTVQCNLERHIRSAHNGEKRFQCAECGANFGRADVLKMHMVKHTTERNIECDICQKKFKTSQHLHYHKKSHLQKAERPKKPVRLKSKPKPKVYEYICEYCDKVSLHRTTHLNHIRTHTGEKPFKCTTCDKAFRTTHARSNHMLLHTDERPHKCKVCSISFRQTSHLKSHMLIHTGVKGHVCQYCQKAFTMKSNLMVHLRMHTGDMPYKCDNCPQRFLQLSRFKRHKLSHMGEEAQQKETGSGNENELADDYTDSQINVYVEEIESS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-