Basic Information

Gene Symbol
SMARCC2
Assembly
GCA_905231855.1
Location
HG993124.1:133925255-133929031[-]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 2.7 4.4e+03 -1.5 0.0 34 43 204 213 203 213 0.87
2 2 1.4e-14 2.2e-11 44.3 0.1 3 44 639 680 637 682 0.95

Sequence Information

Coding Sequence
ATGGTTACTTTAGGTCCCAAAAAGGACGGAAATCCAAATGTGGAGTTTTTCCAATCACCCGAATCAATGCAAGGATTCGACACCATCCGTGTGTGGTTGCAAAAGAATTGTAAAAAATATCTCGCAAACAGTCCCGATCCGATTACAAGTCAGTCACTTTGCAATTTACTTATTCAATTTCTGCTCTATGTCGAGGCAAAACTTGGAAAGAATACAACGGAGCCAGCGACTACCCGAATACCAATGCGCTGCTTTTTGGATTTCAAACCGGGCGGTGGCTTGTGTGTTATATTCGGGACGATGTTTAGATTTCGTGCGGAGCAGCGGGGAAAGAAATTCGATTTCTCCATTGGAAAGAACCCTCAACGGAAGGATCCAAACATTCAATTGATGACAGAAATTGAGCAGGCATTGATCGAAGCTGATTTATATCGCATTCCGTACATCTACATTCGTCCGGAAGTAGACAAAGGTCTAGCACAACGTATCCGAGTGATTTTATCCACTCGACGTGTGGAGATTGTAAACGACGAAGAGGATGAGGTTACGCACGTGATCTATCCAGTGGTAGATCCTCACCCAGACGAGTATGCACGGCCGATATTTAAACGCGGCAATCACATTATGCTTCATTGGTATTGCTTCCCTGAGTCTTATGACACGTGGACAATGAATACATTCGATTTGCCCGATAATATACCAGATAACCCGGAATCACCTTCAGAAAGGTGGCGAGTTTCGGCATCGTGGATCCTGGACTTGGAGCAGTACAATGAGTGGATGGCCGAGGAGGACTATGAAGTCGATGAGAACGGCAAAAAGAAAATGCACAAACATCGTTTATCTGTTGAGGATTTGATGGCTTGCTCTAGCGACGAGAAGAAGCGCTCGGGCAATAAGCAAAAACGCAGGCGTTCACCGTCTCCTACTCAGAAAGCGGGCAAAAGGAAACGCTCCCCGGCGGTTTTGCATAAAAAATCACGCAGCGGTGACGGAGACGATGACGAGGACCTCACACGAGACATGGAGGACCCGATCGCAGAGCCTAATATTCAAGAGGTCATCAAGACATCGGGTATGCAAAGCACAGCAAGTCCAGCACCCGCCTCAAAATCACGCGACAATGATATGATGCCAATCAAGGGCGGCACCATGACAGATTTGGACGATGACATGGAGCGTTCTGGTGGTGGAAGCCAAATGATTACCCCGGCCGAGGGTGAAAACTCGCAGACAGGCAAGACAAGTGAGAACAGCAATACTCAAGAGTTCACCCCCAAGGAGGACATGGAAGACAACGTCACCGAGCAGACCCATCACATCATTGTTCCGTCGTACTCTGCATGGTTCGACTACAACTCTATCCATGTCATAGAGAAGCGTGCCATGCCAGAGTTCTTCAATAGCAAGAACAAGTCGAAGACACCCGAGATCTACATGGCGTACAGGAACTTCATGATCGACACCTATAGGTTAAATCCTACTGAGTACTTAACCAGCACAGCGTGCAGGCGCAACTTGGCGGGCGATGTGTGCGCCATTATGCGTGTGCACGCCTTCCTCGAGCAATGGGGCTTAATCAATTACCAAATCGACGCAGAACTGCGCCCAACACCAATGGGACCGCCCCCAACATCGCACTTCCACATTTTGAGCGACACACCCTCGGGCTTGCAGTCGCTGAATCCGCAGAAGACTCCACAGCCATCGGCAGCCAAGTCCCTTCTCGATTTCGAGAAGAAAAAAGAAGGCATCAAGGAGGGCGAGGGCGAGAAGTCGATCCTGCTGACAGCTGGAGCAGCTGTCAAAGTCGAATCCATCGAGAATGGTGGTGGCCAGTTCGGACTGAAGCTCGATCAGTACACTAAGAAGCCGGCTGCTATGAAAAATCGCACTGCCGCCAACATGGCACGCGAATGGACAGACCAAGAGACACTCTTGCTGCTTGAAGGCCTTGAAATGTACAAGGACGACTGGAACAAGGTGTGCGAGCATGTTGGCACGCGTACACAAGACGAGTGTATTCTGCATTTCCTACGCTTGCCAATTGAGGACCCCTACTTGGAGGATGATGGAGGATTTTTGGGACCCCTCGGCTACCAGCCGATCCCCTTCAGCAAGTCTGGCAATCCGATCATGTCTACCGTCGCGTTTCTCGCGTCTGTTGTTGACCCTCGTGTGGCAGCTGCCGCTGCCAAAGCTGCGATGGAAGAGTTCGCTGCCATAAAGGACGAGGTACCGTCATCTATTATGGACACGCATTACAAAAACGTCGAAAAGCTGAATTCGACAGGGAAATTCGATCCTTACGCTGGACTCTCAAACAGCGGCATTGCCGGCACCGGAGCTGATAAAGAGGACGAAGATCCAGCCAAACCACCGGCACCATCCCAAGACGAGGAAATGAAGGATCTCAGCAAGAAGGACGCAACAGCTGACTCCAGTAATCCTGAATCCCCAAATTCCGACTCTCCCACTCCTTCAGCAGCAGTAGAATCTACTAAATCTTCCACACTCACCCCTTCACTAGGTGTCGATGATAAGGAGATCAAAACTGAAGAGTCATCCATGGAGTCTACCTCCGGCAGTACAGAGGCCACCAATGGCTCCAAGGAGAATGGTGATGGCAGTCGCAAGCAGATTTTCAACGAAGCCAACCTGCAGACAGCTGCTGCAGCAGCTCTTGCCTCTGCGGCCGTCAAAGCCAAGCACTTAGCCGCTCTAGAGGAGCGAAAAATCAAGTCCCTTGTGGCGCTATTGGTGGAAACCCAAATGAAGAAGTTGGAAATCAAGTTACGGCATTTCGAGGAGCTGGAAACAACCATGGAGAGGGAACGTGAGGGATTAGAATATCAAAGGCAACAGCTCATAACGGAGCGTCAACAATTCCATCTGGAGCAGCTGAAGGCCGCCGAGTTCCGCGCCAGACAACAAGCCCATCATCGTCTACAGCAGGAGCAACAATGGCAAGGAAATGCACCTCAAGCTCCAGCAGGTGCAGCCGGTGCTGCTGCCATGGCCAGCACTACTGGCCCAACTCCGCCGTCATCAAGTGGTGTAACTGCTCCGACGGCATCTCAACCCACAGCCCAACCATCGGGACCCGCTCAATCCCAACCGCCTAGCGTACTTCAAACACCTTCTGTGTTAGGTACATCAGCAGCACAACAAAATACTTTCCCCTCAAACAACCTGATCCCAGTCCTTTCAGAGCCACATTCCCAACAGCCACCAATGCCACAAGTTGGCCCAATCGAACCCAATATGCCACCACAGGGACCTCCGCCAGTAAATCCCAGTGCTTTGCAGCAAACACCCCCACAGCAGATGCAGCCGCAGCAACAGCAACCGATTGCCCCTCCAAGTATCATTCCGGTACCACCCTCACCGTCGTCTCAAACCTAG
Protein Sequence
MVTLGPKKDGNPNVEFFQSPESMQGFDTIRVWLQKNCKKYLANSPDPITSQSLCNLLIQFLLYVEAKLGKNTTEPATTRIPMRCFLDFKPGGGLCVIFGTMFRFRAEQRGKKFDFSIGKNPQRKDPNIQLMTEIEQALIEADLYRIPYIYIRPEVDKGLAQRIRVILSTRRVEIVNDEEDEVTHVIYPVVDPHPDEYARPIFKRGNHIMLHWYCFPESYDTWTMNTFDLPDNIPDNPESPSERWRVSASWILDLEQYNEWMAEEDYEVDENGKKKMHKHRLSVEDLMACSSDEKKRSGNKQKRRRSPSPTQKAGKRKRSPAVLHKKSRSGDGDDDEDLTRDMEDPIAEPNIQEVIKTSGMQSTASPAPASKSRDNDMMPIKGGTMTDLDDDMERSGGGSQMITPAEGENSQTGKTSENSNTQEFTPKEDMEDNVTEQTHHIIVPSYSAWFDYNSIHVIEKRAMPEFFNSKNKSKTPEIYMAYRNFMIDTYRLNPTEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQIDAELRPTPMGPPPTSHFHILSDTPSGLQSLNPQKTPQPSAAKSLLDFEKKKEGIKEGEGEKSILLTAGAAVKVESIENGGGQFGLKLDQYTKKPAAMKNRTAANMAREWTDQETLLLLEGLEMYKDDWNKVCEHVGTRTQDECILHFLRLPIEDPYLEDDGGFLGPLGYQPIPFSKSGNPIMSTVAFLASVVDPRVAAAAAKAAMEEFAAIKDEVPSSIMDTHYKNVEKLNSTGKFDPYAGLSNSGIAGTGADKEDEDPAKPPAPSQDEEMKDLSKKDATADSSNPESPNSDSPTPSAAVESTKSSTLTPSLGVDDKEIKTEESSMESTSGSTEATNGSKENGDGSRKQIFNEANLQTAAAAALASAAVKAKHLAALEERKIKSLVALLVETQMKKLEIKLRHFEELETTMEREREGLEYQRQQLITERQQFHLEQLKAAEFRARQQAHHRLQQEQQWQGNAPQAPAGAAGAAAMASTTGPTPPSSSGVTAPTASQPTAQPSGPAQSQPPSVLQTPSVLGTSAAQQNTFPSNNLIPVLSEPHSQQPPMPQVGPIEPNMPPQGPPPVNPSALQQTPPQQMQPQQQQPIAPPSIIPVPPSPSSQT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00672158;
90% Identity
iTF_00312554;
80% Identity
-