Eper008760.1
Basic Information
- Insect
- Eristalis pertinax
- Gene Symbol
- -
- Assembly
- GCA_907269125.1
- Location
- OU026147.1:70905876-70933883[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.75 61 4.2 1.0 1 23 318 341 318 341 0.96 2 10 0.024 1.9 8.9 0.0 2 23 356 378 355 378 0.95 3 10 1.4 1.1e+02 3.3 2.4 2 21 930 951 929 953 0.91 4 10 0.73 58 4.3 0.6 3 20 963 981 961 985 0.91 5 10 1.1e-06 8.9e-05 22.6 2.6 1 23 1021 1043 1021 1043 0.98 6 10 0.0042 0.34 11.3 3.2 1 20 1055 1074 1055 1076 0.93 7 10 4.3e-06 0.00034 20.7 2.3 1 23 1081 1103 1081 1103 0.98 8 10 0.0078 0.62 10.5 3.0 1 23 1109 1131 1109 1131 0.99 9 10 0.00044 0.035 14.4 0.2 1 23 1137 1160 1137 1160 0.98 10 10 0.066 5.3 7.5 0.4 1 23 1169 1191 1169 1191 0.97
Sequence Information
- Coding Sequence
- ATGAATGGCGGAGAGTTCTCCTACGGTGTTAGTGGGAACTCCTATCGTGCTCTGGCGTCATCACAATctgatgacgaagacgatgatgaaaGGGAGGAGCTGGTGAAGAGCCAGAAGGAAAGGGAGAAGCTGGACGCCCACATACGGACTCTGCAGGAAAAGATaaaagccaggaaagcggccaaagaatctgcacaaatgcagcaacaacaacaaaagcagcaaaatcagcagcaactgcaacagccAAAGGGACAAGGATCCGCAGCTGTCacacgacagcaacaacaaccaaagcagcaggcgcaacaacaacagcagcagcagtcacaacaacagcagtcacagcagcagcagtcacagcagcagcagccacagcagcagcagccacagcagcagcagccacagcagcagcagccacagcagcagcagcagcagcaacatcaacagcaaccaacagcagccaaaaaggagagatgtccacccatcaacgtctttgggctagaaacgaaggaggtcgacacattatATTTGACGACACCACTGGACGTGAACTCTTCGAATCATTATTTCAGTTCGATCACAGATGAATTCGCCTCCGCACAGCCGTTGACATCCGCAGCGACAGCAGCCGCCACAACGACTTCCCTGCCAAGTATTCACCCGAACAACGTTAACCTCTTGCCGTTTGTACAAATTCACACCACAAATGCCCAGCCGACCAGCAATAATTTCGGCAACATTTTCCGCCGTCAGCAGAACCACGAGGAGATCAAGTCCGAGGAACCGATCAAGTCGGAGCAGAGTGATGCGGCGGGTAATGTCACACAGCAGCAGAATCCAACCAATTCCACGCCGGACTGTCAGAGTCGGACGGGACACGTGACACCGACTGCAGCGGCTCCGCAGCCGACAAGGGCGCAGGCATCGCAACCATCAAAGCCGACTGTGCACAAGTGCAGTCAGTGTCCTTTCCTGAGCATTCATGGGGAATCTCTAGAGAAGCACGTGGCGACTGTGCACTGCAGCAATGGTGCCCCTTCAAATGTGCAGAGAGGCAAACTCCCATGCCCTGGCTGTGAGAACGTGTTCTACGCTCGGGAGTCGTTGGAAATGCACCTCCTCAGTGATCACCTGATGTGCAAGGACGAAGTGAAACACTTGCTCTCGAGTGTTATGGACGAGCAGCCGAGGAGGAGTCGGATATACTTGAAGAATGTCGAGTGCCTCCGTGAGCCACAGCGTCAGGAACAGATCTTGAGCTTGGATCAGCAGGGGTACTGCAATACATATCAGAACGCAGAGGGAAACAACCTGATAGACCTGATCTGCGAGAACAGTGATGTCGTGCCCGAGGAACACCCGTCTTCCTCGTCGACGCAGCGAGCGAAGCAGAAAATATCGATCAAAAGCGTGGACGTCTTGCGGGAGCCAGCTCTGATGCGGCGCGAGGGACAGAACAATTTTGACTTCCTCCCGTCGCAAAGTGAACAGAGTGATATTCTCTGCCTGGACGATGGCGGCAACACGAGGTACCCGACGTTTCTGCCGCAATCAGACCTCCCAGACCTGTGCCCCGAGCAGCCACCGGTCAGCCAAGCGTTCGACAAGCCACGACGACCCAAGATCTACATTAAGAATGTGGACATCTTGAAGGAGCCCATTTTCCTGCCACCAGACAACCTGACCAACGTGCTCAATGTCAACGATGACATTCACTTCAATCTCTTCCCTTCCGAGGAGGAGTTCCCCGGCGTCCAGGGCAAGTTCATCGCGGAGGATGTCAACAACGAGTACTCCTTCGATTGCGGCAACAATTTCGTGGACTGTGCGAACTTCCTGCTTCCCGATGACACGGGTTTCATGCATACCGAACCCGAACCACCCCGAAGCAAGATTTACATAAAAAACGTCGACATCCTGAAGCAGCCGCAATTCCAGGAGCATCCACGGAAATCCTCCAATTTCCTCCATCTACGCACGGTGGACGAGTTGAATTTGATGAACAAGAACGAAGTTGAGAACCTCATAGCGCCCAACCTCGAGCAGAATAGTGGCACACCGAACATGGTCTCGAATTCGTCGGAGAATTCGAAGAACTCCGAGGAAGTGTGTTCGTTCCGGATGATCAATCAGGATTCTGGGGGCTTCATCAACAAACCCGTGCACTTTCAGACGCCGCCGACAATTAGCTGGACGAACGACTACGTCTTGGATGGGCTGGACAGCATTATTGATTCGAACTCTGGGTGCGAGCAGAAGAACCGGCACTACGAGCTGAACACGCCGCAGATTTCCATGATGGAAGACGTCAACCACGGGGAGGACAACCACGATCCGGAGATTCTGTTCGTGTGCGCCGAGGAGCTGATCAACGCCAACCGAGAGCACACGGAGACTGGGGCGGAGATGACGGGCATCGAGCAGAGTTCACTGGAAATCGTTGAAATTCTCGACGACTTGGAGCGTGATCAGCCAAGTCGGGAATCAGAGCTGGACCCCGTCTGCTTTACACCTTCGGAGAATGGCTTGAACGATTTCGCTGGAGACGCACCGGTCGACCTCGAACTGGACCAGGCGGCTGTGGCTCCGGAGAAGGGACGAATTTACGTTGCCGACAATTTGATGGAGACTGAGAGGGACAACGGTGGGCAAGAGGTAAGTGATCCAGACGACGCCAGTAAATCCAAGTCCAGGCCACGTGGCCGGCCATTCGGATCAAATCGAACGGGAATCACAAAGCTGCGCAAGATCTACGGAAACAACGTGCTCGTGGAAACAGGCACCAAATGCGATGTCAATGGATGTGCGTTTCGTTTCAAGAAGCCAGACACCCTGGAGTACCACAAGAGGTGTCACAATTCTGACAGCACACGTCCCATGATCTGTCCCGAGTGCGAGTCTACCAACTTCTCCAACTGGAATACGCTGCACACGCATCTCTGGCGGAGTCACAAGATCGACATGGAGCTGCACAGTTGTGAGCTGTGCAACTTCAAAACACCCATCTACTCCCGGTTGGTGAACACTCACAGCAAGATACATTCCGATGAGCGCAACTACAAGTGCGACCAGTGCGAGAAGGCCTTTAAGAATAGCAAGCAGTTGAAGAACCATCGGCGGTGGCACCGGACGATAACGGCGGCCCCACCGCCCGATGTGCATCGCTGTGAGGAGTGCGGCGCTGCGTTTTCGCATCTGAAATCACTGCGGGAACACTTCTGCAAGAGCAGCGATCTGTTCTGCTGCGAGGTCTGTGGCAGAACACTGTCTTCCAAGTCATCGCTCAAACTGCACATGCTCACGCACGAGCCGGTGAAGAAGTTCAAGTGCAGCTCGTGCGGGTACATGGCGAACGACCACAACGCCTTCCGAAGGCATCGCATGACGCACGACAAGAGCAAAATGTACGTTTGTCCGCTCTGTGACTACAAGTCCATTCAGAGTGTCGCCTATCAGAATCACATCCGCATCAAACATCCCGAGTCTGCCGACACAATTGTGCACAAGTGTAAATTCTGTCCCTTTGCCACCATCAATGGGGGCCTGCTTAACGTGCACCTGGCCAAGCACAAGCTGAGGGAAGAACACCTGCGAGTCGAGGGCCAGAGGGAGAAATCACGAAGTGCTGATGTGGCCATGCCCACGACTGATGAGCCATCGagtaccaacaacaacaacaacaacaccataAGTGGATCACCTTCATTCGCAACCGACTTAGATAATAAGATCCCTGAAAGTTCAACTATCGAGACTGATAATCAGCAACAACCTAGGAATAAAATTAAAGTTAAGAGTGATTTAGTTTTAACGGACCCTGCGAAATTCTCCTCGTCGAATGCTGTTAGCCCATTATTGTTGCATTGTTTTGATAACGCCATTAGATGA
- Protein Sequence
- MNGGEFSYGVSGNSYRALASSQSDDEDDDEREELVKSQKEREKLDAHIRTLQEKIKARKAAKESAQMQQQQQKQQNQQQLQQPKGQGSAAVTRQQQQPKQQAQQQQQQQSQQQQSQQQQSQQQQPQQQQPQQQQPQQQQPQQQQQQQHQQQPTAAKKERCPPINVFGLETKEVDTLYLTTPLDVNSSNHYFSSITDEFASAQPLTSAATAAATTTSLPSIHPNNVNLLPFVQIHTTNAQPTSNNFGNIFRRQQNHEEIKSEEPIKSEQSDAAGNVTQQQNPTNSTPDCQSRTGHVTPTAAAPQPTRAQASQPSKPTVHKCSQCPFLSIHGESLEKHVATVHCSNGAPSNVQRGKLPCPGCENVFYARESLEMHLLSDHLMCKDEVKHLLSSVMDEQPRRSRIYLKNVECLREPQRQEQILSLDQQGYCNTYQNAEGNNLIDLICENSDVVPEEHPSSSSTQRAKQKISIKSVDVLREPALMRREGQNNFDFLPSQSEQSDILCLDDGGNTRYPTFLPQSDLPDLCPEQPPVSQAFDKPRRPKIYIKNVDILKEPIFLPPDNLTNVLNVNDDIHFNLFPSEEEFPGVQGKFIAEDVNNEYSFDCGNNFVDCANFLLPDDTGFMHTEPEPPRSKIYIKNVDILKQPQFQEHPRKSSNFLHLRTVDELNLMNKNEVENLIAPNLEQNSGTPNMVSNSSENSKNSEEVCSFRMINQDSGGFINKPVHFQTPPTISWTNDYVLDGLDSIIDSNSGCEQKNRHYELNTPQISMMEDVNHGEDNHDPEILFVCAEELINANREHTETGAEMTGIEQSSLEIVEILDDLERDQPSRESELDPVCFTPSENGLNDFAGDAPVDLELDQAAVAPEKGRIYVADNLMETERDNGGQEVSDPDDASKSKSRPRGRPFGSNRTGITKLRKIYGNNVLVETGTKCDVNGCAFRFKKPDTLEYHKRCHNSDSTRPMICPECESTNFSNWNTLHTHLWRSHKIDMELHSCELCNFKTPIYSRLVNTHSKIHSDERNYKCDQCEKAFKNSKQLKNHRRWHRTITAAPPPDVHRCEECGAAFSHLKSLREHFCKSSDLFCCEVCGRTLSSKSSLKLHMLTHEPVKKFKCSSCGYMANDHNAFRRHRMTHDKSKMYVCPLCDYKSIQSVAYQNHIRIKHPESADTIVHKCKFCPFATINGGLLNVHLAKHKLREEHLRVEGQREKSRSADVAMPTTDEPSSTNNNNNNTISGSPSFATDLDNKIPESSTIETDNQQQPRNKIKVKSDLVLTDPAKFSSSNAVSPLLLHCFDNAIR*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00671789;
- 90% Identity
- iTF_00673082;
- 80% Identity
- -