Basic Information

Insect: Eristalis pertinax
Gene Symbol: Sry-delta
Assembly: GCA_907269125.1
Location: OU026145.1:111490956-111492059[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 7.5e-05 0.006 16.8 3.0 2 23 151 172 150 172 0.97

2 6 0.0032 0.26 11.7 0.0 3 23 178 198 177 198 0.97

3 6 1.2e-05 0.00094 19.3 2.6 2 23 205 226 205 226 0.96

4 6 7.9e-05 0.0064 16.7 2.6 1 23 232 254 232 254 0.97

5 6 2.1e-05 0.0017 18.5 2.9 2 23 262 283 261 283 0.96

6 6 4.8e-07 3.9e-05 23.7 1.0 1 23 290 312 290 312 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	7.5e-05	0.006	16.8	3.0	2	23	151	172	150	172	0.97
2	6	0.0032	0.26	11.7	0.0	3	23	178	198	177	198	0.97
3	6	1.2e-05	0.00094	19.3	2.6	2	23	205	226	205	226	0.96
4	6	7.9e-05	0.0064	16.7	2.6	1	23	232	254	232	254	0.97
5	6	2.1e-05	0.0017	18.5	2.9	2	23	262	283	261	283	0.96
6	6	4.8e-07	3.9e-05	23.7	1.0	1	23	290	312	290	312	0.98

Sequence Information

Coding Sequence: ATGGAATCAGAACCGGAGTACTTGCTTACATTGCGATGCATACTCTGTCGATGTAAATACGATTCAAATTCCGACTTCAAGAGCATCAAGAAAACAAGCGTTCTGTCATCAAAGAAATCTCTAAAGGATGTCCTCATTCATATTGCCAAATGCATCAAGAGACCAGTAGTTATTCCGGACATGGCTTATGCATGCGGCTTATGTTACGAAGAACTGACTGAATACGATCAAGTAATGCTTCAGCTACTAATGCACCAAAGAAAACTAGCACGAATGTTAGAGACGTCTCTTAACACGGTAGATTATTACGACGACGATGATCAAATTTCAATTAAAGAAGAACTTGAGGTTGAGGCTTCAATAGACAGTTGTTCTGAACCAGAGGACGATGGTAAACAAGAATACATACCAAATGAGGAGCCATTGTCGAACAAGTCAGACATATCGGTGCAGTGTACGATATGCAAAAAGAAACTATGCTCTAAAGCCTCTCTGAGAACACACATGGATTCGCATGCGAAGGCGAAGATATGCCCTATTTGTGGTGTAATTCGAAGAGATGATGAATACCTCGAATTACATATGAACGTTCACGAGGGGAAGTCTGAAAACGAGTGCCGATACTGCCCCAAGCGGTATTCACGACGTTCGAATGTCATACGACACATGCACCTGCATTGGGataagaaaaaattccaatgcgAAAAATGCGGATTACGATTCTCCCAAGCGAACCTGCTCTACAATCACAAGCTCCACCATGAGGCGGAGGAGAAGCCCTTAGTGTGCACCAAATGTGGTCAAGTGTTCAAATCAAGGAAAACATACAGTCATCATATGGTAACCCATCAGGAAGATCGGCCTATGTACCCGTGCGAGGTGTGCGGAAAGAAATTCACCGAGAAGTACTCCCTGAAAATACACTCAAAAACTCACAGGCCGGCAACCGAAGATGAGTCAGAGTTTGCGAAAAAACACGAAGTCCTTGTGAAAAAGAAGCCACAACCGGTGTTTCCGTGCATAATATGTCATCAGGTTATGGGCGCCAAGGAGATTCTGGACACACACATGGCGAGGGAACACGATGTCATAAGTCCGGTATAG
Protein Sequence: MESEPEYLLTLRCILCRCKYDSNSDFKSIKKTSVLSSKKSLKDVLIHIAKCIKRPVVIPDMAYACGLCYEELTEYDQVMLQLLMHQRKLARMLETSLNTVDYYDDDDQISIKEELEVEASIDSCSEPEDDGKQEYIPNEEPLSNKSDISVQCTICKKKLCSKASLRTHMDSHAKAKICPICGVIRRDDEYLELHMNVHEGKSENECRYCPKRYSRRSNVIRHMHLHWDKKKFQCEKCGLRFSQANLLYNHKLHHEAEEKPLVCTKCGQVFKSRKTYSHHMVTHQEDRPMYPCEVCGKKFTEKYSLKIHSKTHRPATEDESEFAKKHEVLVKKKPQPVFPCIICHQVMGAKEILDTHMAREHDVISPV*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00673053;
90% Identity: -
80% Identity: -